miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 29200 0.68 0.970411
Target:  5'- gGCgUGCAAGuguuGCGUGCGUCaCCGa -3'
miRNA:   3'- aUGgGCGUUUuuuuUGCGCGCAG-GGU- -5'
24357 5' -50.6 NC_005264.1 + 29649 0.66 0.994931
Target:  5'- gGCCCGCAGucGGucCGCcGCGUUgCGu -3'
miRNA:   3'- aUGGGCGUUuuUUuuGCG-CGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 29892 0.66 0.990955
Target:  5'- cUugCCGCGAAG---GCGUGCGgcgcuacCCCGu -3'
miRNA:   3'- -AugGGCGUUUUuuuUGCGCGCa------GGGU- -5'
24357 5' -50.6 NC_005264.1 + 30357 0.66 0.995452
Target:  5'- -cCCCGCAGGAgccccuucggcgccGccGCGuCGCGUCUCGg -3'
miRNA:   3'- auGGGCGUUUU--------------UuuUGC-GCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 31698 0.68 0.976024
Target:  5'- cUGCCCGcCAAAGGucGCGCGCGgggCgUAc -3'
miRNA:   3'- -AUGGGC-GUUUUUuuUGCGCGCa--GgGU- -5'
24357 5' -50.6 NC_005264.1 + 33429 0.67 0.98661
Target:  5'- cGCCCGCGAGAAuAAACcccCGCGcugacuauuaauUCCCGc -3'
miRNA:   3'- aUGGGCGUUUUU-UUUGc--GCGC------------AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 33701 0.66 0.990955
Target:  5'- gACCCGCGAAGAAAGCGauCGg-CUAu -3'
miRNA:   3'- aUGGGCGUUUUUUUUGCgcGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 33850 0.66 0.993072
Target:  5'- cGCgCCGCGGcagagcuGAAGAACGUggaGCGUCCg- -3'
miRNA:   3'- aUG-GGCGUU-------UUUUUUGCG---CGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 34199 0.67 0.988207
Target:  5'- cAgCCGCGGcauGGAGCgcauacuugGCGUGUCCCAa -3'
miRNA:   3'- aUgGGCGUUuu-UUUUG---------CGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 34425 0.67 0.989652
Target:  5'- uUGCCUGCGAguGAGGAAUcuguuaGUGUCCCGg -3'
miRNA:   3'- -AUGGGCGUU--UUUUUUGcg----CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 34429 0.7 0.938145
Target:  5'- gACCCGCGAGcacuuucGAGGAgGCGaucaagcuCGUCCCGc -3'
miRNA:   3'- aUGGGCGUUU-------UUUUUgCGC--------GCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 36958 0.67 0.982923
Target:  5'- aGCCCGCAcgacaGAGGuuGCGCGCuggCgCCAu -3'
miRNA:   3'- aUGGGCGU-----UUUUuuUGCGCGca-G-GGU- -5'
24357 5' -50.6 NC_005264.1 + 38769 0.66 0.995662
Target:  5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3'
miRNA:   3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 39227 0.67 0.989652
Target:  5'- cGCUgGCGGGGAGGGCcUGCGuUCCCGg -3'
miRNA:   3'- aUGGgCGUUUUUUUUGcGCGC-AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 41308 0.71 0.904158
Target:  5'- -cCCCGCGcuGAAGuCGCGCGaggCCCGc -3'
miRNA:   3'- auGGGCGUuuUUUUuGCGCGCa--GGGU- -5'
24357 5' -50.6 NC_005264.1 + 42173 0.72 0.879058
Target:  5'- cGCCCGgAAAGAGAuggcagguuggagccGCGCccaccgGCGUCCCGu -3'
miRNA:   3'- aUGGGCgUUUUUUU---------------UGCG------CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 42443 0.67 0.99019
Target:  5'- gAUCCGCGAAAAgggggugacguAGACaccgggcucaggucuGCGUGUCCCc -3'
miRNA:   3'- aUGGGCGUUUUU-----------UUUG---------------CGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 44944 0.67 0.988207
Target:  5'- gGCCCGUu------GCGCGCGugacUCCCu -3'
miRNA:   3'- aUGGGCGuuuuuuuUGCGCGC----AGGGu -5'
24357 5' -50.6 NC_005264.1 + 45566 0.67 0.984852
Target:  5'- cGCCCGUGuc---GGCGCGCacgaGUCCCu -3'
miRNA:   3'- aUGGGCGUuuuuuUUGCGCG----CAGGGu -5'
24357 5' -50.6 NC_005264.1 + 45667 0.66 0.993172
Target:  5'- cGCCaagCGCAGuGAAgcacGugGCGCGaUCCCGg -3'
miRNA:   3'- aUGG---GCGUUuUUU----UugCGCGC-AGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.