miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 717 0.67 0.988207
Target:  5'- aUGCgCCGCGAAAGAGauuACGC-CGaUCCUAg -3'
miRNA:   3'- -AUG-GGCGUUUUUUU---UGCGcGC-AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 2389 0.67 0.98661
Target:  5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3'
miRNA:   3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5'
24357 5' -50.6 NC_005264.1 + 2589 0.73 0.8357
Target:  5'- cGCCCGCGAGgucuccaaagGAGAAgGCGCGagCCGa -3'
miRNA:   3'- aUGGGCGUUU----------UUUUUgCGCGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 2725 0.72 0.886351
Target:  5'- cGCCCGCGGccgggcccgucuucuAGGuuuAACgGCGCGUCCCc -3'
miRNA:   3'- aUGGGCGUU---------------UUUu--UUG-CGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 4339 0.72 0.868447
Target:  5'- cUGCCCcugGCGGcu-GAGCGCGCGUCgCAg -3'
miRNA:   3'- -AUGGG---CGUUuuuUUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 4678 0.66 0.993172
Target:  5'- aUACCUGCGucggggcGAGugGCGcCGCGUCCaCGa -3'
miRNA:   3'- -AUGGGCGUu------UUUuuUGC-GCGCAGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 6889 0.69 0.963914
Target:  5'- -gUCCGCGAGc----CGCGCaGUCCCAg -3'
miRNA:   3'- auGGGCGUUUuuuuuGCGCG-CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 8593 0.68 0.970411
Target:  5'- --aCCGCAGAc---GCGCGUGUUCCu -3'
miRNA:   3'- augGGCGUUUuuuuUGCGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 8906 0.67 0.988207
Target:  5'- --gUCGCu--GGAGACGCGCGUCUUc -3'
miRNA:   3'- augGGCGuuuUUUUUGCGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 11396 0.69 0.967276
Target:  5'- -uCCUGCAGAGGGAGUG-GCGUUCCAg -3'
miRNA:   3'- auGGGCGUUUUUUUUGCgCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 12913 0.66 0.993744
Target:  5'- gGCCuCGCAGuccuccccCGaCGCGUCCCc -3'
miRNA:   3'- aUGG-GCGUUuuuuuu--GC-GCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 13898 0.67 0.98661
Target:  5'- cGCCUGCAGGcgacGGGGCGCGaaCGUCCa- -3'
miRNA:   3'- aUGGGCGUUUu---UUUUGCGC--GCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 14348 0.68 0.976024
Target:  5'- cGCCaaCGCGAcca----GCGCGUCCCAu -3'
miRNA:   3'- aUGG--GCGUUuuuuuugCGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 14875 0.68 0.973324
Target:  5'- gGCCaUGUAcacuAGACGCGCGUCCa- -3'
miRNA:   3'- aUGG-GCGUuuuuUUUGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 16448 0.67 0.988207
Target:  5'- cUGCCCGCGGGuguGAACGUG-GUCgaaCCAg -3'
miRNA:   3'- -AUGGGCGUUUuu-UUUGCGCgCAG---GGU- -5'
24357 5' -50.6 NC_005264.1 + 16764 0.68 0.970411
Target:  5'- gACCCGCGc-GGGGGCGCGCuGUUCgGg -3'
miRNA:   3'- aUGGGCGUuuUUUUUGCGCG-CAGGgU- -5'
24357 5' -50.6 NC_005264.1 + 19060 0.83 0.361454
Target:  5'- aUACCCGCG--GGAAGCGCGCuUCCCGc -3'
miRNA:   3'- -AUGGGCGUuuUUUUUGCGCGcAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 19798 0.77 0.661678
Target:  5'- cUGCCCGCAAGAAAuGCGUcgacguaaaacucccGCGUCCaCAu -3'
miRNA:   3'- -AUGGGCGUUUUUUuUGCG---------------CGCAGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 20334 0.74 0.780733
Target:  5'- cACCgGCAAgcAGGAAACGCGcCGUgCCAg -3'
miRNA:   3'- aUGGgCGUU--UUUUUUGCGC-GCAgGGU- -5'
24357 5' -50.6 NC_005264.1 + 27265 0.69 0.952399
Target:  5'- cACCCGUAGucgcGAGcGACGCGCGgcuUCUCGa -3'
miRNA:   3'- aUGGGCGUU----UUUuUUGCGCGC---AGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.