miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 161470 0.67 0.99019
Target:  5'- gAUCCGCGAAAAgggggugacguAGACaccgggcucaggucuGCGUGUCCCc -3'
miRNA:   3'- aUGGGCGUUUUU-----------UUUG---------------CGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 161200 0.72 0.879058
Target:  5'- cGCCCGgAAAGAGAuggcagguuggagccGCGCccaccgGCGUCCCGu -3'
miRNA:   3'- aUGGGCgUUUUUUU---------------UGCG------CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 160399 0.67 0.989652
Target:  5'- --gCCGCAAGGAAGAgugcaggcugcUGUGCG-CCCAg -3'
miRNA:   3'- augGGCGUUUUUUUU-----------GCGCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 160335 0.71 0.904158
Target:  5'- -cCCCGCGcuGAAGuCGCGCGaggCCCGc -3'
miRNA:   3'- auGGGCGUuuUUUUuGCGCGCa--GGGU- -5'
24357 5' -50.6 NC_005264.1 + 159526 0.7 0.938643
Target:  5'- cGCuCCGCuugcacGGCGCGCGaUCCCGc -3'
miRNA:   3'- aUG-GGCGuuuuuuUUGCGCGC-AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 159348 0.73 0.8357
Target:  5'- cGCCCGCAAAccuccACGaCGCGUgCCAc -3'
miRNA:   3'- aUGGGCGUUUuuuu-UGC-GCGCAgGGU- -5'
24357 5' -50.6 NC_005264.1 + 159135 0.66 0.992125
Target:  5'- cGCCCGCGGcAAGuACuGUGCG-CCCu -3'
miRNA:   3'- aUGGGCGUUuUUUuUG-CGCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 158254 0.67 0.989652
Target:  5'- cGCUgGCGGGGAGGGCcUGCGuUCCCGg -3'
miRNA:   3'- aUGGgCGUUUUUUUUGcGCGC-AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 157795 0.66 0.995662
Target:  5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3'
miRNA:   3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 157293 0.66 0.990955
Target:  5'- cACCUGCGAAGAGAAacccgcucCGCGCGagacgCCgCGg -3'
miRNA:   3'- aUGGGCGUUUUUUUU--------GCGCGCa----GG-GU- -5'
24357 5' -50.6 NC_005264.1 + 155985 0.67 0.982923
Target:  5'- aGCCCGCAcgacaGAGGuuGCGCGCuggCgCCAu -3'
miRNA:   3'- aUGGGCGU-----UUUUuuUGCGCGca-G-GGU- -5'
24357 5' -50.6 NC_005264.1 + 155852 0.66 0.992125
Target:  5'- cGCCCGCAGGGAcAAcccCGCGCcaacUCUCAu -3'
miRNA:   3'- aUGGGCGUUUUUuUU---GCGCGc---AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 154229 0.68 0.975763
Target:  5'- cGCCUaccggugcgcguuGCGGAGGAAcACGCGCGUCUg- -3'
miRNA:   3'- aUGGG-------------CGUUUUUUU-UGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 153923 0.81 0.422813
Target:  5'- -uUCCGCGAGuaccuGAAGACGCGCGUCuCCAg -3'
miRNA:   3'- auGGGCGUUU-----UUUUUGCGCGCAG-GGU- -5'
24357 5' -50.6 NC_005264.1 + 153452 0.67 0.989652
Target:  5'- uUGCCUGCGAguGAGGAAUcuguuaGUGUCCCGg -3'
miRNA:   3'- -AUGGGCGUU--UUUUUUGcg----CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 152928 0.69 0.952399
Target:  5'- aGCCCGCAGu-----CGCGaGUCCCc -3'
miRNA:   3'- aUGGGCGUUuuuuuuGCGCgCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 152727 0.66 0.990955
Target:  5'- gACCCGCGAAGAAAGCGauCGg-CUAu -3'
miRNA:   3'- aUGGGCGUUUUUUUUGCgcGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 150724 0.68 0.976024
Target:  5'- cUGCCCGcCAAAGGucGCGCGCGgggCgUAc -3'
miRNA:   3'- -AUGGGC-GUUUUUuuUGCGCGCa--GgGU- -5'
24357 5' -50.6 NC_005264.1 + 149384 0.66 0.995452
Target:  5'- -cCCCGCAGGAgccccuucggcgccGccGCGuCGCGUCUCGg -3'
miRNA:   3'- auGGGCGUUUU--------------UuuUGC-GCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 148571 0.67 0.989514
Target:  5'- gGCCCGCGAcgugcccGAGGAACGCGCu----- -3'
miRNA:   3'- aUGGGCGUU-------UUUUUUGCGCGcagggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.