miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 139837 1.07 0.011519
Target:  5'- gUACCCGCAAAAAAAACGCGCGUCCCAu -3'
miRNA:   3'- -AUGGGCGUUUUUUUUGCGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 19060 0.83 0.361454
Target:  5'- aUACCCGCG--GGAAGCGCGCuUCCCGc -3'
miRNA:   3'- -AUGGGCGUuuUUUUUGCGCGcAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 153923 0.81 0.422813
Target:  5'- -uUCCGCGAGuaccuGAAGACGCGCGUCuCCAg -3'
miRNA:   3'- auGGGCGUUU-----UUUUUGCGCGCAG-GGU- -5'
24357 5' -50.6 NC_005264.1 + 140690 0.81 0.450956
Target:  5'- gGCCCGCGGcgcaaucuAAGGCGCGCGUCCg- -3'
miRNA:   3'- aUGGGCGUUuu------UUUUGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 87879 0.77 0.63609
Target:  5'- uUACCCGCAGuac-GACGCcacccucgucGCGUCCCGa -3'
miRNA:   3'- -AUGGGCGUUuuuuUUGCG----------CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 19798 0.77 0.661678
Target:  5'- cUGCCCGCAAGAAAuGCGUcgacguaaaacucccGCGUCCaCAu -3'
miRNA:   3'- -AUGGGCGUUUUUUuUGCG---------------CGCAGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 20334 0.74 0.780733
Target:  5'- cACCgGCAAgcAGGAAACGCGcCGUgCCAg -3'
miRNA:   3'- aUGGgCGUU--UUUUUUGCGC-GCAgGGU- -5'
24357 5' -50.6 NC_005264.1 + 159348 0.73 0.8357
Target:  5'- cGCCCGCAAAccuccACGaCGCGUgCCAc -3'
miRNA:   3'- aUGGGCGUUUuuuu-UGC-GCGCAgGGU- -5'
24357 5' -50.6 NC_005264.1 + 121616 0.73 0.8357
Target:  5'- cGCCCGCGAGgucuccaaagGAGAAgGCGCGagCCGa -3'
miRNA:   3'- aUGGGCGUUU----------UUUUUgCGCGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 2589 0.73 0.8357
Target:  5'- cGCCCGCGAGgucuccaaagGAGAAgGCGCGagCCGa -3'
miRNA:   3'- aUGGGCGUUU----------UUUUUgCGCGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 4339 0.72 0.868447
Target:  5'- cUGCCCcugGCGGcu-GAGCGCGCGUCgCAg -3'
miRNA:   3'- -AUGGG---CGUUuuuUUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 123366 0.72 0.868447
Target:  5'- cUGCCCcugGCGGcu-GAGCGCGCGUCgCAg -3'
miRNA:   3'- -AUGGG---CGUUuuuUUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 42173 0.72 0.879058
Target:  5'- cGCCCGgAAAGAGAuggcagguuggagccGCGCccaccgGCGUCCCGu -3'
miRNA:   3'- aUGGGCgUUUUUUU---------------UGCG------CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 161200 0.72 0.879058
Target:  5'- cGCCCGgAAAGAGAuggcagguuggagccGCGCccaccgGCGUCCCGu -3'
miRNA:   3'- aUGGGCgUUUUUUU---------------UGCG------CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 2725 0.72 0.886351
Target:  5'- cGCCCGCGGccgggcccgucuucuAGGuuuAACgGCGCGUCCCc -3'
miRNA:   3'- aUGGGCGUU---------------UUUu--UUG-CGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 67082 0.72 0.89061
Target:  5'- aGCCCGUguucGAGGAAAucuACGCGCG-CCUAu -3'
miRNA:   3'- aUGGGCG----UUUUUUU---UGCGCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 120292 0.72 0.89061
Target:  5'- cUGCCgGCGc-GAAGACGCGCGgaagcugcgCCCAc -3'
miRNA:   3'- -AUGGgCGUuuUUUUUGCGCGCa--------GGGU- -5'
24357 5' -50.6 NC_005264.1 + 92029 0.71 0.900199
Target:  5'- cGCCCGCGAAAGAAAUGUggaggucggugggccGCGcUCCUu -3'
miRNA:   3'- aUGGGCGUUUUUUUUGCG---------------CGC-AGGGu -5'
24357 5' -50.6 NC_005264.1 + 160335 0.71 0.904158
Target:  5'- -cCCCGCGcuGAAGuCGCGCGaggCCCGc -3'
miRNA:   3'- auGGGCGUuuUUUUuGCGCGCa--GGGU- -5'
24357 5' -50.6 NC_005264.1 + 41308 0.71 0.904158
Target:  5'- -cCCCGCGcuGAAGuCGCGCGaggCCCGc -3'
miRNA:   3'- auGGGCGUuuUUUUuGCGCGCa--GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.