miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 56079 0.68 0.976024
Target:  5'- cGCCCGCu-----GACGCcGCGUCUUg -3'
miRNA:   3'- aUGGGCGuuuuuuUUGCG-CGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 111422 0.69 0.960318
Target:  5'- gGCCUGcCGGAAAccAUGCGCGUUCUg -3'
miRNA:   3'- aUGGGC-GUUUUUuuUGCGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 69357 0.69 0.963914
Target:  5'- gGCCCGUuugu--GGCGCGUGUCgCGu -3'
miRNA:   3'- aUGGGCGuuuuuuUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 6889 0.69 0.963914
Target:  5'- -gUCCGCGAGc----CGCGCaGUCCCAg -3'
miRNA:   3'- auGGGCGUUUuuuuuGCGCG-CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 130423 0.69 0.967276
Target:  5'- -uCCUGCAGAGGGAGUG-GCGUUCCAg -3'
miRNA:   3'- auGGGCGUUUUUUUUGCgCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 8593 0.68 0.970411
Target:  5'- --aCCGCAGAc---GCGCGUGUUCCu -3'
miRNA:   3'- augGGCGUUUuuuuUGCGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 16764 0.68 0.970411
Target:  5'- gACCCGCGc-GGGGGCGCGCuGUUCgGg -3'
miRNA:   3'- aUGGGCGUuuUUUUUGCGCG-CAGGgU- -5'
24357 5' -50.6 NC_005264.1 + 93163 0.68 0.970411
Target:  5'- --aCCGCGGAGAAccaaggccccAGCGcCGCGUgCCCGa -3'
miRNA:   3'- augGGCGUUUUUU----------UUGC-GCGCA-GGGU- -5'
24357 5' -50.6 NC_005264.1 + 14875 0.68 0.973324
Target:  5'- gGCCaUGUAcacuAGACGCGCGUCCa- -3'
miRNA:   3'- aUGG-GCGUuuuuUUUGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 121763 0.7 0.948068
Target:  5'- gGCCCGUcuucuAGGuuuAACgGCGCGUCCCc -3'
miRNA:   3'- aUGGGCGu----UUUuu-UUG-CGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 77053 0.7 0.948068
Target:  5'- gACCCG--GAAGAGGCGCGCGagCUAc -3'
miRNA:   3'- aUGGGCguUUUUUUUGCGCGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 98568 0.7 0.938643
Target:  5'- gUGCgCCGCAAGAuGAACG-GCG-CCCGc -3'
miRNA:   3'- -AUG-GGCGUUUUuUUUGCgCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 87879 0.77 0.63609
Target:  5'- uUACCCGCAGuac-GACGCcacccucgucGCGUCCCGa -3'
miRNA:   3'- -AUGGGCGUUuuuuUUGCG----------CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 20334 0.74 0.780733
Target:  5'- cACCgGCAAgcAGGAAACGCGcCGUgCCAg -3'
miRNA:   3'- aUGGgCGUU--UUUUUUGCGC-GCAgGGU- -5'
24357 5' -50.6 NC_005264.1 + 121616 0.73 0.8357
Target:  5'- cGCCCGCGAGgucuccaaagGAGAAgGCGCGagCCGa -3'
miRNA:   3'- aUGGGCGUUU----------UUUUUgCGCGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 123366 0.72 0.868447
Target:  5'- cUGCCCcugGCGGcu-GAGCGCGCGUCgCAg -3'
miRNA:   3'- -AUGGG---CGUUuuuUUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 161200 0.72 0.879058
Target:  5'- cGCCCGgAAAGAGAuggcagguuggagccGCGCccaccgGCGUCCCGu -3'
miRNA:   3'- aUGGGCgUUUUUUU---------------UGCG------CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 160335 0.71 0.904158
Target:  5'- -cCCCGCGcuGAAGuCGCGCGaggCCCGc -3'
miRNA:   3'- auGGGCGUuuUUUUuGCGCGCa--GGGU- -5'
24357 5' -50.6 NC_005264.1 + 71828 0.71 0.922568
Target:  5'- cGCCCGCGGGGucgcgaauAACGaCGCGUCgCGg -3'
miRNA:   3'- aUGGGCGUUUUuu------UUGC-GCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 34429 0.7 0.938145
Target:  5'- gACCCGCGAGcacuuucGAGGAgGCGaucaagcuCGUCCCGc -3'
miRNA:   3'- aUGGGCGUUU-------UUUUUgCGC--------GCAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.