miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 112283 0.66 0.995662
Target:  5'- -uCCCGCAc-----GCGCGCG-CCUAg -3'
miRNA:   3'- auGGGCGUuuuuuuUGCGCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 58497 0.66 0.990955
Target:  5'- aUGCgCGCAA---GAGCGCgguGCGUCCUc -3'
miRNA:   3'- -AUGgGCGUUuuuUUUGCG---CGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 157293 0.66 0.990955
Target:  5'- cACCUGCGAAGAGAAacccgcucCGCGCGagacgCCgCGg -3'
miRNA:   3'- aUGGGCGUUUUUUUU--------GCGCGCa----GG-GU- -5'
24357 5' -50.6 NC_005264.1 + 139837 1.07 0.011519
Target:  5'- gUACCCGCAAAAAAAACGCGCGUCCCAu -3'
miRNA:   3'- -AUGGGCGUUUUUUUUGCGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 30357 0.66 0.995452
Target:  5'- -cCCCGCAGGAgccccuucggcgccGccGCGuCGCGUCUCGg -3'
miRNA:   3'- auGGGCGUUUU--------------UuuUGC-GCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 140352 0.66 0.994931
Target:  5'- aUGCCCGCAGuGAugcgauaggccGAGCGaaGCG-CCCAa -3'
miRNA:   3'- -AUGGGCGUUuUU-----------UUUGCg-CGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 116367 0.66 0.994931
Target:  5'- aACCCGCGAcuccacaggcAAAGAGCGcCGCGcaaaagCCgCAg -3'
miRNA:   3'- aUGGGCGUU----------UUUUUUGC-GCGCa-----GG-GU- -5'
24357 5' -50.6 NC_005264.1 + 104147 0.66 0.994931
Target:  5'- gACCCGaaccgaauAGAAAACGCGUG-CCUc -3'
miRNA:   3'- aUGGGCguu-----UUUUUUGCGCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 12913 0.66 0.993744
Target:  5'- gGCCuCGCAGuccuccccCGaCGCGUCCCc -3'
miRNA:   3'- aUGG-GCGUUuuuuuu--GC-GCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 155852 0.66 0.992125
Target:  5'- cGCCCGCAGGGAcAAcccCGCGCcaacUCUCAu -3'
miRNA:   3'- aUGGGCGUUUUUuUU---GCGCGc---AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 45667 0.66 0.993172
Target:  5'- cGCCaagCGCAGuGAAgcacGugGCGCGaUCCCGg -3'
miRNA:   3'- aUGG---GCGUUuUUU----UugCGCGC-AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 74061 0.66 0.994104
Target:  5'- gGCCCuCGAAGGGAACGCgGCaUCCgGa -3'
miRNA:   3'- aUGGGcGUUUUUUUUGCG-CGcAGGgU- -5'
24357 5' -50.6 NC_005264.1 + 38769 0.66 0.995662
Target:  5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3'
miRNA:   3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 159135 0.66 0.992125
Target:  5'- cGCCCGCGGcAAGuACuGUGCG-CCCu -3'
miRNA:   3'- aUGGGCGUUuUUUuUG-CGCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 127949 0.66 0.995662
Target:  5'- cUGCCCuCGAAGAAGGCG-GCGgCCUg -3'
miRNA:   3'- -AUGGGcGUUUUUUUUGCgCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 29649 0.66 0.994931
Target:  5'- gGCCCGCAGucGGucCGCcGCGUUgCGu -3'
miRNA:   3'- aUGGGCGUUuuUUuuGCG-CGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 84445 0.66 0.992125
Target:  5'- aGCCCGCu-GAGAcACGCGCGaCgUAu -3'
miRNA:   3'- aUGGGCGuuUUUUuUGCGCGCaGgGU- -5'
24357 5' -50.6 NC_005264.1 + 33701 0.66 0.990955
Target:  5'- gACCCGCGAAGAAAGCGauCGg-CUAu -3'
miRNA:   3'- aUGGGCGUUUUUUUUGCgcGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 124425 0.66 0.995662
Target:  5'- aACUCGCA----GAGCGCGUGcUCCgCGg -3'
miRNA:   3'- aUGGGCGUuuuuUUUGCGCGC-AGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 130537 0.66 0.994931
Target:  5'- gACCUGCGcGAAGcgucgcGGCGCGUGUgCUAc -3'
miRNA:   3'- aUGGGCGUuUUUU------UUGCGCGCAgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.