miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 77011 0.66 0.994104
Target:  5'- gACCCGguAcu-GAGCGCGCGcUUCUu -3'
miRNA:   3'- aUGGGCguUuuuUUUGCGCGC-AGGGu -5'
24357 5' -50.6 NC_005264.1 + 53846 0.66 0.992125
Target:  5'- aGCUCGUcguucaaggcuAGGAGAGACGCGuCGUaCCCc -3'
miRNA:   3'- aUGGGCG-----------UUUUUUUUGCGC-GCA-GGGu -5'
24357 5' -50.6 NC_005264.1 + 30357 0.66 0.995452
Target:  5'- -cCCCGCAGGAgccccuucggcgccGccGCGuCGCGUCUCGg -3'
miRNA:   3'- auGGGCGUUUU--------------UuuUGC-GCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 38769 0.66 0.995662
Target:  5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3'
miRNA:   3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 53254 0.66 0.994104
Target:  5'- -cCCCGCG-----GGCGCGUGUCUg- -3'
miRNA:   3'- auGGGCGUuuuuuUUGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 33850 0.66 0.993072
Target:  5'- cGCgCCGCGGcagagcuGAAGAACGUggaGCGUCCg- -3'
miRNA:   3'- aUG-GGCGUU-------UUUUUUGCG---CGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 135553 0.66 0.994931
Target:  5'- --aCCGCGAugacuuucGAGAAGcCGCGCGUCgCu -3'
miRNA:   3'- augGGCGUU--------UUUUUU-GCGCGCAGgGu -5'
24357 5' -50.6 NC_005264.1 + 29892 0.66 0.990955
Target:  5'- cUugCCGCGAAG---GCGUGCGgcgcuacCCCGu -3'
miRNA:   3'- -AugGGCGUUUUuuuUGCGCGCa------GGGU- -5'
24357 5' -50.6 NC_005264.1 + 139294 0.66 0.990955
Target:  5'- cAUCCGCGGu---AGCGCguaGCGUUCCGc -3'
miRNA:   3'- aUGGGCGUUuuuuUUGCG---CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 112283 0.66 0.995662
Target:  5'- -uCCCGCAc-----GCGCGCG-CCUAg -3'
miRNA:   3'- auGGGCGUuuuuuuUGCGCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 123705 0.66 0.993172
Target:  5'- aUACCUGCGucggggcGAGugGCGcCGCGUCCaCGa -3'
miRNA:   3'- -AUGGGCGUu------UUUuuUGC-GCGCAGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 157795 0.66 0.995662
Target:  5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3'
miRNA:   3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 115815 0.66 0.994931
Target:  5'- --aCCGCG--GGAGGC-CGCGUUCCAc -3'
miRNA:   3'- augGGCGUuuUUUUUGcGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 131939 0.66 0.993744
Target:  5'- gGCCuCGCAGuccuccccCGaCGCGUCCCc -3'
miRNA:   3'- aUGG-GCGUUuuuuuu--GC-GCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 124425 0.66 0.995662
Target:  5'- aACUCGCA----GAGCGCGUGcUCCgCGg -3'
miRNA:   3'- aUGGGCGUuuuuUUUGCGCGC-AGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 152727 0.66 0.990955
Target:  5'- gACCCGCGAAGAAAGCGauCGg-CUAu -3'
miRNA:   3'- aUGGGCGUUUUUUUUGCgcGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 87438 0.66 0.992014
Target:  5'- cUGCCCGCGgccgcgcAGAcgGugGCGCG-CaCCAc -3'
miRNA:   3'- -AUGGGCGU-------UUUuuUugCGCGCaG-GGU- -5'
24357 5' -50.6 NC_005264.1 + 48790 0.66 0.995662
Target:  5'- gGCCgGCGGGGcGAACGaccuCGCGuuUCCCAc -3'
miRNA:   3'- aUGGgCGUUUUuUUUGC----GCGC--AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 127949 0.66 0.995662
Target:  5'- cUGCCCuCGAAGAAGGCG-GCGgCCUg -3'
miRNA:   3'- -AUGGGcGUUUUUUUUGCgCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 149384 0.66 0.995452
Target:  5'- -cCCCGCAGGAgccccuucggcgccGccGCGuCGCGUCUCGg -3'
miRNA:   3'- auGGGCGUUUU--------------UuuUGC-GCGCAGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.