miRNA display CGI


Results 41 - 60 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 45675 0.67 0.984852
Target:  5'- gGCCCGCuucauguGAGAGuAAgGCGCGaaguugCCCAg -3'
miRNA:   3'- aUGGGCGu------UUUUU-UUgCGCGCa-----GGGU- -5'
24357 5' -50.6 NC_005264.1 + 46838 0.7 0.945348
Target:  5'- aUACCCGaCAGAGGGcgacgcacacggccuGGCGUucaGCGUCCCu -3'
miRNA:   3'- -AUGGGC-GUUUUUU---------------UUGCG---CGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 48790 0.66 0.995662
Target:  5'- gGCCgGCGGGGcGAACGaccuCGCGuuUCCCAc -3'
miRNA:   3'- aUGGgCGUUUUuUUUGC----GCGC--AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 51357 0.67 0.984852
Target:  5'- --gCCGaCAGGAAGGGCGCaGCGUCUg- -3'
miRNA:   3'- augGGC-GUUUUUUUUGCG-CGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 52709 0.67 0.988207
Target:  5'- cGCCCGCccccAAAAGCGCgGCGgcUCUCGg -3'
miRNA:   3'- aUGGGCGuuu-UUUUUGCG-CGC--AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 53254 0.66 0.994104
Target:  5'- -cCCCGCG-----GGCGCGUGUCUg- -3'
miRNA:   3'- auGGGCGUuuuuuUUGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 53846 0.66 0.992125
Target:  5'- aGCUCGUcguucaaggcuAGGAGAGACGCGuCGUaCCCc -3'
miRNA:   3'- aUGGGCG-----------UUUUUUUUGCGC-GCA-GGGu -5'
24357 5' -50.6 NC_005264.1 + 54289 0.67 0.98661
Target:  5'- gGCCaauuggGCGAAAGAGACGUGCGaCgCAg -3'
miRNA:   3'- aUGGg-----CGUUUUUUUUGCGCGCaGgGU- -5'
24357 5' -50.6 NC_005264.1 + 55155 0.7 0.948068
Target:  5'- gGCCCGCAAAuccacccuGAAC-CGCGUCUa- -3'
miRNA:   3'- aUGGGCGUUUuu------UUUGcGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 56079 0.68 0.976024
Target:  5'- cGCCCGCu-----GACGCcGCGUCUUg -3'
miRNA:   3'- aUGGGCGuuuuuuUUGCG-CGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 58497 0.66 0.990955
Target:  5'- aUGCgCGCAA---GAGCGCgguGCGUCCUc -3'
miRNA:   3'- -AUGgGCGUUuuuUUUGCG---CGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 59792 0.68 0.973324
Target:  5'- cGCCCGCAGGGGGcGCGUaGCG-CaCCAu -3'
miRNA:   3'- aUGGGCGUUUUUUuUGCG-CGCaG-GGU- -5'
24357 5' -50.6 NC_005264.1 + 62596 0.67 0.988207
Target:  5'- gACCgCGCGAAGuagcGGCGCGgaCGUUCCGa -3'
miRNA:   3'- aUGG-GCGUUUUuu--UUGCGC--GCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 63288 0.67 0.989652
Target:  5'- aGgCCGCAAGAAAA---CGCGUCCUc -3'
miRNA:   3'- aUgGGCGUUUUUUUugcGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 64081 0.71 0.910552
Target:  5'- gGCCUGUggGuucucuCGCGCGUCCUc -3'
miRNA:   3'- aUGGGCGuuUuuuuu-GCGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 67082 0.72 0.89061
Target:  5'- aGCCCGUguucGAGGAAAucuACGCGCG-CCUAu -3'
miRNA:   3'- aUGGGCG----UUUUUUU---UGCGCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 69357 0.69 0.963914
Target:  5'- gGCCCGUuugu--GGCGCGUGUCgCGu -3'
miRNA:   3'- aUGGGCGuuuuuuUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 71828 0.71 0.922568
Target:  5'- cGCCCGCGGGGucgcgaauAACGaCGCGUCgCGg -3'
miRNA:   3'- aUGGGCGUUUUuu------UUGC-GCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 74061 0.66 0.994104
Target:  5'- gGCCCuCGAAGGGAACGCgGCaUCCgGa -3'
miRNA:   3'- aUGGGcGUUUUUUUUGCG-CGcAGGgU- -5'
24357 5' -50.6 NC_005264.1 + 77011 0.66 0.994104
Target:  5'- gACCCGguAcu-GAGCGCGCGcUUCUu -3'
miRNA:   3'- aUGGGCguUuuuUUUGCGCGC-AGGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.