miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 3' -52 NC_005264.1 + 79211 0.66 0.975843
Target:  5'- cCUGGG--GCUAGGCugcguGCAGGcGGCGGCg -3'
miRNA:   3'- aGACCCuuCGGUCCG-----UGUUC-UUGUUG- -5'
24359 3' -52 NC_005264.1 + 80095 0.66 0.982755
Target:  5'- -gUGGGuuGCUGGGUcuauCGAGGAUGACg -3'
miRNA:   3'- agACCCuuCGGUCCGu---GUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 84204 0.72 0.790919
Target:  5'- gCUGGaGcgaggaggacGAGCUAGGCACAAGAAUgcgAGCg -3'
miRNA:   3'- aGACC-C----------UUCGGUCCGUGUUCUUG---UUG- -5'
24359 3' -52 NC_005264.1 + 84537 0.76 0.563472
Target:  5'- aUCUGgcaagucgcGGAAGCCGGGCAaagaacGGAGCAGCu -3'
miRNA:   3'- -AGAC---------CCUUCGGUCCGUgu----UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 84918 0.78 0.501917
Target:  5'- --cGGGAagAGCCAGGCGCGGGA-CAAa -3'
miRNA:   3'- agaCCCU--UCGGUCCGUGUUCUuGUUg -5'
24359 3' -52 NC_005264.1 + 88233 0.66 0.982755
Target:  5'- --gGGGAacguggGGUCAGGCGCGGGGuCAu- -3'
miRNA:   3'- agaCCCU------UCGGUCCGUGUUCUuGUug -5'
24359 3' -52 NC_005264.1 + 88545 0.67 0.973141
Target:  5'- aCUGuGgcGCCgcAGGUACGAGAucGCGGCg -3'
miRNA:   3'- aGACcCuuCGG--UCCGUGUUCU--UGUUG- -5'
24359 3' -52 NC_005264.1 + 89165 0.7 0.883571
Target:  5'- aCUGGcAGGCCAGGCAagUAGGGucgucccgGCGGCa -3'
miRNA:   3'- aGACCcUUCGGUCCGU--GUUCU--------UGUUG- -5'
24359 3' -52 NC_005264.1 + 98461 0.66 0.980642
Target:  5'- --cGGGAuuugucaacccGGCCGGcacGCGCGAGGGCAu- -3'
miRNA:   3'- agaCCCU-----------UCGGUC---CGUGUUCUUGUug -5'
24359 3' -52 NC_005264.1 + 101832 0.7 0.876218
Target:  5'- cCUGGccGAAGCCgAGGCA-GAGAACGAg -3'
miRNA:   3'- aGACC--CUUCGG-UCCGUgUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 103698 0.67 0.963734
Target:  5'- --gGGGAAGUUgaGGGC-CAguGGAGCGGCg -3'
miRNA:   3'- agaCCCUUCGG--UCCGuGU--UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 106861 0.68 0.947917
Target:  5'- aUCUGcGGGgucauGGgCGGGCACGAacGCAGCg -3'
miRNA:   3'- -AGAC-CCU-----UCgGUCCGUGUUcuUGUUG- -5'
24359 3' -52 NC_005264.1 + 115894 0.66 0.98469
Target:  5'- --cGGGggGCCAGuGaGCAAcgccaaggagacGAGCGGCg -3'
miRNA:   3'- agaCCCuuCGGUC-CgUGUU------------CUUGUUG- -5'
24359 3' -52 NC_005264.1 + 116277 0.7 0.868631
Target:  5'- aCUuGGAAGCCGuGGCGCGGGcggcuACGGCu -3'
miRNA:   3'- aGAcCCUUCGGU-CCGUGUUCu----UGUUG- -5'
24359 3' -52 NC_005264.1 + 116431 0.74 0.71122
Target:  5'- gCUGGGGGcGUCuGGcCGCGGGGGCGACg -3'
miRNA:   3'- aGACCCUU-CGGuCC-GUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 121973 0.66 0.980642
Target:  5'- --cGGGAagacGGCgAGGaagaugACGAGGACGACg -3'
miRNA:   3'- agaCCCU----UCGgUCCg-----UGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 122326 0.67 0.970227
Target:  5'- --cGGGGAGUgAGGgGCuuccGAACGGCg -3'
miRNA:   3'- agaCCCUUCGgUCCgUGuu--CUUGUUG- -5'
24359 3' -52 NC_005264.1 + 123386 0.67 0.963734
Target:  5'- cCUGuuGGAGGCguGGUGCGAGAuGCAGa -3'
miRNA:   3'- aGAC--CCUUCGguCCGUGUUCU-UGUUg -5'
24359 3' -52 NC_005264.1 + 124755 0.67 0.973141
Target:  5'- --cGGGggGCCAaggaagcacGGCGgguaggcauugUGAGAGCGGCg -3'
miRNA:   3'- agaCCCuuCGGU---------CCGU-----------GUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 125801 0.69 0.933436
Target:  5'- aCaaGGGAGCCAGGgAUggGuGCGGCg -3'
miRNA:   3'- aGacCCUUCGGUCCgUGuuCuUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.