miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 3' -52 NC_005264.1 + 44992 0.72 0.81854
Target:  5'- --aGGGcGAGCCuGGCgagaacggcgACGAGAGCGACg -3'
miRNA:   3'- agaCCC-UUCGGuCCG----------UGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 48067 0.74 0.700823
Target:  5'- --aGGGAcaucGGCCGagcGGCGCAGGGACAAg -3'
miRNA:   3'- agaCCCU----UCGGU---CCGUGUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 48338 0.66 0.978341
Target:  5'- cCUGGGGAGUUGGcGCACGccauGGCGGCc -3'
miRNA:   3'- aGACCCUUCGGUC-CGUGUuc--UUGUUG- -5'
24359 3' -52 NC_005264.1 + 48391 0.74 0.700823
Target:  5'- aCUGGGgcGUCGGGCGgcggcCAGGAGCGGg -3'
miRNA:   3'- aGACCCuuCGGUCCGU-----GUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 50261 0.69 0.933436
Target:  5'- cUCUGGGGAcGCCAuGGcCGCgGAGAucacCAACg -3'
miRNA:   3'- -AGACCCUU-CGGU-CC-GUG-UUCUu---GUUG- -5'
24359 3' -52 NC_005264.1 + 50406 0.66 0.975843
Target:  5'- --aGGGggGUgGauauGGUacGCAAGAGCAACu -3'
miRNA:   3'- agaCCCuuCGgU----CCG--UGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 50577 0.7 0.883571
Target:  5'- --cGGGAAGCgCAcgcGGCGCu-GAGCAGCc -3'
miRNA:   3'- agaCCCUUCG-GU---CCGUGuuCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 53308 0.67 0.966768
Target:  5'- --cGGGAAGUCugcccagGGGCugcuuggccaGCAGGGGCAGCc -3'
miRNA:   3'- agaCCCUUCGG-------UCCG----------UGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 54532 0.7 0.89755
Target:  5'- uUCUGGc--GCgAGGCAacgaaGAGAGCAGCa -3'
miRNA:   3'- -AGACCcuuCGgUCCGUg----UUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 54719 0.71 0.836057
Target:  5'- -gUGGGAAGCguGGCGCucacguGGACGGa -3'
miRNA:   3'- agACCCUUCGguCCGUGuu----CUUGUUg -5'
24359 3' -52 NC_005264.1 + 56176 0.66 0.978341
Target:  5'- gUCUaGGGggGCUAGGCucucACGGGGuugguCAGa -3'
miRNA:   3'- -AGA-CCCuuCGGUCCG----UGUUCUu----GUUg -5'
24359 3' -52 NC_005264.1 + 56918 0.66 0.982755
Target:  5'- -aUGGGGcggcguacguGCguGGCGCAcGGGGCGACg -3'
miRNA:   3'- agACCCUu---------CGguCCGUGU-UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 58364 0.66 0.98469
Target:  5'- cUCUGGcGggGCC-GGCGCGAuauGCGc- -3'
miRNA:   3'- -AGACC-CuuCGGuCCGUGUUcu-UGUug -5'
24359 3' -52 NC_005264.1 + 58475 0.68 0.943344
Target:  5'- gUCUGGGAAcGCCugacggucGGCccGCcuGAGCGGCa -3'
miRNA:   3'- -AGACCCUU-CGGu-------CCG--UGuuCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 60618 0.71 0.836057
Target:  5'- --cGcGGcAGCCGGcucGCGCAGGAGCAGCa -3'
miRNA:   3'- agaC-CCuUCGGUC---CGUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 60880 0.69 0.921926
Target:  5'- --cGGGAugacaccGGCCAGGC---GGGACGGCg -3'
miRNA:   3'- agaCCCU-------UCGGUCCGuguUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 62246 0.68 0.956311
Target:  5'- --cGGGAAGCCgccacAGGCuguACAAcGACGGCg -3'
miRNA:   3'- agaCCCUUCGG-----UCCG---UGUUcUUGUUG- -5'
24359 3' -52 NC_005264.1 + 64397 0.69 0.9225
Target:  5'- cUCU-GGAAGCCcGGC-CAAGGcCGACg -3'
miRNA:   3'- -AGAcCCUUCGGuCCGuGUUCUuGUUG- -5'
24359 3' -52 NC_005264.1 + 64762 0.67 0.970227
Target:  5'- --gGGGcGGCCgGGGCACAccauGCAACa -3'
miRNA:   3'- agaCCCuUCGG-UCCGUGUucu-UGUUG- -5'
24359 3' -52 NC_005264.1 + 68192 0.66 0.982755
Target:  5'- gUUUGGGcuuGGUUAGGUACAGGuauauccuCAGCg -3'
miRNA:   3'- -AGACCCu--UCGGUCCGUGUUCuu------GUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.