miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 3' -52 NC_005264.1 + 2947 0.66 0.980642
Target:  5'- --cGGGAagacGGCgAGGaagaugACGAGGACGACg -3'
miRNA:   3'- agaCCCU----UCGgUCCg-----UGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 3299 0.67 0.970227
Target:  5'- --cGGGGAGUgAGGgGCuuccGAACGGCg -3'
miRNA:   3'- agaCCCUUCGgUCCgUGuu--CUUGUUG- -5'
24359 3' -52 NC_005264.1 + 3646 0.66 0.980642
Target:  5'- uUCUGGGAGGCgGuuuGaGCugGGG-GCGACu -3'
miRNA:   3'- -AGACCCUUCGgU---C-CGugUUCuUGUUG- -5'
24359 3' -52 NC_005264.1 + 6775 0.69 0.933436
Target:  5'- aCaaGGGAGCCAGGgAUggGuGCGGCg -3'
miRNA:   3'- aGacCCUUCGGUCCgUGuuCuUGUUG- -5'
24359 3' -52 NC_005264.1 + 8765 0.66 0.975843
Target:  5'- cUCUGGGGAGaggcgaacggCGGGCGuCGgccAGGACGGCc -3'
miRNA:   3'- -AGACCCUUCg---------GUCCGU-GU---UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 12765 0.67 0.970227
Target:  5'- -aUGGGGcagcGCCGGGCACA---ACGAUg -3'
miRNA:   3'- agACCCUu---CGGUCCGUGUucuUGUUG- -5'
24359 3' -52 NC_005264.1 + 18525 0.67 0.963734
Target:  5'- aUCgGGGgcGCCgucucccccugaGGGCGCGccggcgucagucGGAGCGGCa -3'
miRNA:   3'- -AGaCCCuuCGG------------UCCGUGU------------UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 19416 0.67 0.970227
Target:  5'- --gGGGAGGCgAGGCGCcGGGugugGCcGCg -3'
miRNA:   3'- agaCCCUUCGgUCCGUGuUCU----UGuUG- -5'
24359 3' -52 NC_005264.1 + 25221 0.73 0.741934
Target:  5'- --cGGGGAGagcgaCAcGCGCAAGAACAGCa -3'
miRNA:   3'- agaCCCUUCg----GUcCGUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 25474 0.77 0.542678
Target:  5'- -gUGGGGGcGCCAGGCguACGGGAACGAg -3'
miRNA:   3'- agACCCUU-CGGUCCG--UGUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 29227 0.76 0.595032
Target:  5'- -aUGGGGAGCCAGcGguCGAGGagcACAGCg -3'
miRNA:   3'- agACCCUUCGGUC-CguGUUCU---UGUUG- -5'
24359 3' -52 NC_005264.1 + 30028 0.66 0.978341
Target:  5'- gCUGcGGAGGUUAGGCAaauggGGGAAuCGGCu -3'
miRNA:   3'- aGAC-CCUUCGGUCCGUg----UUCUU-GUUG- -5'
24359 3' -52 NC_005264.1 + 32685 0.68 0.956311
Target:  5'- cUCUGGuGGcGGCCAGGCuuuuaGCGGGggUGAg -3'
miRNA:   3'- -AGACC-CU-UCGGUCCG-----UGUUCuuGUUg -5'
24359 3' -52 NC_005264.1 + 33933 0.75 0.61623
Target:  5'- gCUGGGAAgGCCGuGGCGCGccGGGACcGCg -3'
miRNA:   3'- aGACCCUU-CGGU-CCGUGU--UCUUGuUG- -5'
24359 3' -52 NC_005264.1 + 38353 0.66 0.981509
Target:  5'- gCUGGGcGGCgGGGCGguUaggaccuccuccggcGAGAGCGGCg -3'
miRNA:   3'- aGACCCuUCGgUCCGU--G---------------UUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 39314 0.66 0.975843
Target:  5'- aUUGGGAucuCUAGGCACuuGGACAccGCg -3'
miRNA:   3'- aGACCCUuc-GGUCCGUGuuCUUGU--UG- -5'
24359 3' -52 NC_005264.1 + 41368 0.67 0.963734
Target:  5'- cUCcGGGAAGaaCGGGCACAcGGACGu- -3'
miRNA:   3'- -AGaCCCUUCg-GUCCGUGUuCUUGUug -5'
24359 3' -52 NC_005264.1 + 41857 0.68 0.947917
Target:  5'- -aUGGG-AGCuCGGGgGgGGGGGCAACg -3'
miRNA:   3'- agACCCuUCG-GUCCgUgUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 43583 0.66 0.982755
Target:  5'- gCUGuGgcGCCAGGCAC-GGAaaGCGAUc -3'
miRNA:   3'- aGACcCuuCGGUCCGUGuUCU--UGUUG- -5'
24359 3' -52 NC_005264.1 + 44881 0.67 0.965105
Target:  5'- cCUGGGGAGgCGGGCccgucgucgucugggGCGGGAGgAGa -3'
miRNA:   3'- aGACCCUUCgGUCCG---------------UGUUCUUgUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.