miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 3' -52 NC_005264.1 + 162610 0.66 0.982755
Target:  5'- gCUGuGgcGCCAGGCAC-GGAaaGCGAUc -3'
miRNA:   3'- aGACcCuuCGGUCCGUGuUCU--UGUUG- -5'
24359 3' -52 NC_005264.1 + 160883 0.68 0.947917
Target:  5'- -aUGGG-AGCuCGGGgGgGGGGGCAACg -3'
miRNA:   3'- agACCCuUCG-GUCCgUgUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 160395 0.67 0.963734
Target:  5'- cUCcGGGAAGaaCGGGCACAcGGACGu- -3'
miRNA:   3'- -AGaCCCUUCg-GUCCGUGUuCUUGUug -5'
24359 3' -52 NC_005264.1 + 157380 0.66 0.981509
Target:  5'- gCUGGGcGGCgGGGCGguUaggaccuccuccggcGAGAGCGGCg -3'
miRNA:   3'- aGACCCuUCGgUCCGU--G---------------UUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 153792 0.7 0.890683
Target:  5'- aUCUGGcGGugacuuuccccaAGCCAGGCGCGaacgcgucGGGACuAACg -3'
miRNA:   3'- -AGACC-CU------------UCGGUCCGUGU--------UCUUG-UUG- -5'
24359 3' -52 NC_005264.1 + 152960 0.75 0.61623
Target:  5'- gCUGGGAAgGCCGuGGCGCGccGGGACcGCg -3'
miRNA:   3'- aGACCCUU-CGGU-CCGUGU--UCUUGuUG- -5'
24359 3' -52 NC_005264.1 + 152666 0.71 0.860814
Target:  5'- cUCUGGGAcgagGGCUGGGaccaaGCGGGGGCGGg -3'
miRNA:   3'- -AGACCCU----UCGGUCCg----UGUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 150795 0.68 0.956311
Target:  5'- -aUGGGGGcGUguGGgGCAGGAgcGCAGCg -3'
miRNA:   3'- agACCCUU-CGguCCgUGUUCU--UGUUG- -5'
24359 3' -52 NC_005264.1 + 147585 0.7 0.883571
Target:  5'- aCgGGGAacGGUcgCAGGCGCAugcAGAACGACc -3'
miRNA:   3'- aGaCCCU--UCG--GUCCGUGU---UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 146611 0.67 0.963734
Target:  5'- aCUGGGAGG--GGGCucaGAGggUAGCg -3'
miRNA:   3'- aGACCCUUCggUCCGug-UUCuuGUUG- -5'
24359 3' -52 NC_005264.1 + 142093 0.66 0.984505
Target:  5'- gCUGuGGucGCCAGGCAUGaccgguuGGAAUuaGACa -3'
miRNA:   3'- aGAC-CCuuCGGUCCGUGU-------UCUUG--UUG- -5'
24359 3' -52 NC_005264.1 + 139738 0.67 0.970227
Target:  5'- gUUGGGAGG-CGGGCgGCA--GACAACg -3'
miRNA:   3'- aGACCCUUCgGUCCG-UGUucUUGUUG- -5'
24359 3' -52 NC_005264.1 + 138578 1.1 0.00512
Target:  5'- cUCUGGGAAGCCAGGCACAAGAACAACu -3'
miRNA:   3'- -AGACCCUUCGGUCCGUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 138468 0.66 0.984505
Target:  5'- --gGGGGAGCCGcgaagccGGUcauGCcAGAGCGGCg -3'
miRNA:   3'- agaCCCUUCGGU-------CCG---UGuUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 136649 0.69 0.928097
Target:  5'- -gUGGGAAGUgGGGCGCc--AACGGCc -3'
miRNA:   3'- agACCCUUCGgUCCGUGuucUUGUUG- -5'
24359 3' -52 NC_005264.1 + 136363 0.67 0.973141
Target:  5'- gCUGGGcgcuGCC-GGCGCGaauagcgcuguGGAGCGAUg -3'
miRNA:   3'- aGACCCuu--CGGuCCGUGU-----------UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 132392 0.67 0.970227
Target:  5'- aCUGGuGAacguGGCCgcAGGCACGAGcuACAAg -3'
miRNA:   3'- aGACC-CU----UCGG--UCCGUGUUCu-UGUUg -5'
24359 3' -52 NC_005264.1 + 131508 0.71 0.860814
Target:  5'- cCUGGGggGUuuaUAGGCACAucaguuacaccuGGGACAc- -3'
miRNA:   3'- aGACCCuuCG---GUCCGUGU------------UCUUGUug -5'
24359 3' -52 NC_005264.1 + 127791 0.66 0.975843
Target:  5'- cUCUGGGGAGaggcgaacggCGGGCGuCGgccAGGACGGCc -3'
miRNA:   3'- -AGACCCUUCg---------GUCCGU-GU---UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 125801 0.69 0.933436
Target:  5'- aCaaGGGAGCCAGGgAUggGuGCGGCg -3'
miRNA:   3'- aGacCCUUCGGUCCgUGuuCuUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.