miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 3' -52 NC_005264.1 + 18525 0.67 0.963734
Target:  5'- aUCgGGGgcGCCgucucccccugaGGGCGCGccggcgucagucGGAGCGGCa -3'
miRNA:   3'- -AGaCCCuuCGG------------UCCGUGU------------UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 136649 0.69 0.928097
Target:  5'- -gUGGGAAGUgGGGCGCc--AACGGCc -3'
miRNA:   3'- agACCCUUCGgUCCGUGuucUUGUUG- -5'
24359 3' -52 NC_005264.1 + 50261 0.69 0.933436
Target:  5'- cUCUGGGGAcGCCAuGGcCGCgGAGAucacCAACg -3'
miRNA:   3'- -AGACCCUU-CGGU-CC-GUG-UUCUu---GUUG- -5'
24359 3' -52 NC_005264.1 + 125801 0.69 0.933436
Target:  5'- aCaaGGGAGCCAGGgAUggGuGCGGCg -3'
miRNA:   3'- aGacCCUUCGGUCCgUGuuCuUGUUG- -5'
24359 3' -52 NC_005264.1 + 58475 0.68 0.943344
Target:  5'- gUCUGGGAAcGCCugacggucGGCccGCcuGAGCGGCa -3'
miRNA:   3'- -AGACCCUU-CGGu-------CCG--UGuuCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 106861 0.68 0.947917
Target:  5'- aUCUGcGGGgucauGGgCGGGCACGAacGCAGCg -3'
miRNA:   3'- -AGAC-CCU-----UCgGUCCGUGUUcuUGUUG- -5'
24359 3' -52 NC_005264.1 + 160883 0.68 0.947917
Target:  5'- -aUGGG-AGCuCGGGgGgGGGGGCAACg -3'
miRNA:   3'- agACCCuUCG-GUCCgUgUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 32685 0.68 0.956311
Target:  5'- cUCUGGuGGcGGCCAGGCuuuuaGCGGGggUGAg -3'
miRNA:   3'- -AGACC-CU-UCGGUCCG-----UGUUCuuGUUg -5'
24359 3' -52 NC_005264.1 + 160395 0.67 0.963734
Target:  5'- cUCcGGGAAGaaCGGGCACAcGGACGu- -3'
miRNA:   3'- -AGaCCCUUCg-GUCCGUGUuCUUGUug -5'
24359 3' -52 NC_005264.1 + 64397 0.69 0.9225
Target:  5'- cUCU-GGAAGCCcGGC-CAAGGcCGACg -3'
miRNA:   3'- -AGAcCCUUCGGuCCGuGUUCUuGUUG- -5'
24359 3' -52 NC_005264.1 + 54532 0.7 0.89755
Target:  5'- uUCUGGc--GCgAGGCAacgaaGAGAGCAGCa -3'
miRNA:   3'- -AGACCcuuCGgUCCGUg----UUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 147585 0.7 0.883571
Target:  5'- aCgGGGAacGGUcgCAGGCGCAugcAGAACGACc -3'
miRNA:   3'- aGaCCCU--UCG--GUCCGUGU---UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 152960 0.75 0.61623
Target:  5'- gCUGGGAAgGCCGuGGCGCGccGGGACcGCg -3'
miRNA:   3'- aGACCCUU-CGGU-CCGUGU--UCUUGuUG- -5'
24359 3' -52 NC_005264.1 + 48067 0.74 0.700823
Target:  5'- --aGGGAcaucGGCCGagcGGCGCAGGGACAAg -3'
miRNA:   3'- agaCCCU----UCGGU---CCGUGUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 116431 0.74 0.71122
Target:  5'- gCUGGGGGcGUCuGGcCGCGGGGGCGACg -3'
miRNA:   3'- aGACCCUU-CGGuCC-GUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 25221 0.73 0.741934
Target:  5'- --cGGGGAGagcgaCAcGCGCAAGAACAGCa -3'
miRNA:   3'- agaCCCUUCg----GUcCGUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 84204 0.72 0.790919
Target:  5'- gCUGGaGcgaggaggacGAGCUAGGCACAAGAAUgcgAGCg -3'
miRNA:   3'- aGACC-C----------UUCGGUCCGUGUUCUUG---UUG- -5'
24359 3' -52 NC_005264.1 + 60618 0.71 0.836057
Target:  5'- --cGcGGcAGCCGGcucGCGCAGGAGCAGCa -3'
miRNA:   3'- agaC-CCuUCGGUC---CGUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 152666 0.71 0.860814
Target:  5'- cUCUGGGAcgagGGCUGGGaccaaGCGGGGGCGGg -3'
miRNA:   3'- -AGACCCU----UCGGUCCg----UGUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 50577 0.7 0.883571
Target:  5'- --cGGGAAGCgCAcgcGGCGCu-GAGCAGCc -3'
miRNA:   3'- agaCCCUUCG-GU---CCGUGuuCUUGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.