miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 3' -52 NC_005264.1 + 138578 1.1 0.00512
Target:  5'- cUCUGGGAAGCCAGGCACAAGAACAACu -3'
miRNA:   3'- -AGACCCUUCGGUCCGUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 84918 0.78 0.501917
Target:  5'- --cGGGAagAGCCAGGCGCGGGA-CAAa -3'
miRNA:   3'- agaCCCU--UCGGUCCGUGUUCUuGUUg -5'
24359 3' -52 NC_005264.1 + 25474 0.77 0.542678
Target:  5'- -gUGGGGGcGCCAGGCguACGGGAACGAg -3'
miRNA:   3'- agACCCUU-CGGUCCG--UGUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 84537 0.76 0.563472
Target:  5'- aUCUGgcaagucgcGGAAGCCGGGCAaagaacGGAGCAGCu -3'
miRNA:   3'- -AGAC---------CCUUCGGUCCGUgu----UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 29227 0.76 0.595032
Target:  5'- -aUGGGGAGCCAGcGguCGAGGagcACAGCg -3'
miRNA:   3'- agACCCUUCGGUC-CguGUUCU---UGUUG- -5'
24359 3' -52 NC_005264.1 + 152960 0.75 0.61623
Target:  5'- gCUGGGAAgGCCGuGGCGCGccGGGACcGCg -3'
miRNA:   3'- aGACCCUU-CGGU-CCGUGU--UCUUGuUG- -5'
24359 3' -52 NC_005264.1 + 33933 0.75 0.61623
Target:  5'- gCUGGGAAgGCCGuGGCGCGccGGGACcGCg -3'
miRNA:   3'- aGACCCUU-CGGU-CCGUGU--UCUUGuUG- -5'
24359 3' -52 NC_005264.1 + 48391 0.74 0.700823
Target:  5'- aCUGGGgcGUCGGGCGgcggcCAGGAGCGGg -3'
miRNA:   3'- aGACCCuuCGGUCCGU-----GUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 48067 0.74 0.700823
Target:  5'- --aGGGAcaucGGCCGagcGGCGCAGGGACAAg -3'
miRNA:   3'- agaCCCU----UCGGU---CCGUGUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 116431 0.74 0.71122
Target:  5'- gCUGGGGGcGUCuGGcCGCGGGGGCGACg -3'
miRNA:   3'- aGACCCUU-CGGuCC-GUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 25221 0.73 0.741934
Target:  5'- --cGGGGAGagcgaCAcGCGCAAGAACAGCa -3'
miRNA:   3'- agaCCCUUCg----GUcCGUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 84204 0.72 0.790919
Target:  5'- gCUGGaGcgaggaggacGAGCUAGGCACAAGAAUgcgAGCg -3'
miRNA:   3'- aGACC-C----------UUCGGUCCGUGUUCUUG---UUG- -5'
24359 3' -52 NC_005264.1 + 44992 0.72 0.81854
Target:  5'- --aGGGcGAGCCuGGCgagaacggcgACGAGAGCGACg -3'
miRNA:   3'- agaCCC-UUCGGuCCG----------UGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 60618 0.71 0.836057
Target:  5'- --cGcGGcAGCCGGcucGCGCAGGAGCAGCa -3'
miRNA:   3'- agaC-CCuUCGGUC---CGUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 54719 0.71 0.836057
Target:  5'- -gUGGGAAGCguGGCGCucacguGGACGGa -3'
miRNA:   3'- agACCCUUCGguCCGUGuu----CUUGUUg -5'
24359 3' -52 NC_005264.1 + 152666 0.71 0.860814
Target:  5'- cUCUGGGAcgagGGCUGGGaccaaGCGGGGGCGGg -3'
miRNA:   3'- -AGACCCU----UCGGUCCg----UGUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 131508 0.71 0.860814
Target:  5'- cCUGGGggGUuuaUAGGCACAucaguuacaccuGGGACAc- -3'
miRNA:   3'- aGACCCuuCG---GUCCGUGU------------UCUUGUug -5'
24359 3' -52 NC_005264.1 + 116277 0.7 0.868631
Target:  5'- aCUuGGAAGCCGuGGCGCGGGcggcuACGGCu -3'
miRNA:   3'- aGAcCCUUCGGU-CCGUGUUCu----UGUUG- -5'
24359 3' -52 NC_005264.1 + 101832 0.7 0.876218
Target:  5'- cCUGGccGAAGCCgAGGCA-GAGAACGAg -3'
miRNA:   3'- aGACC--CUUCGG-UCCGUgUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 89165 0.7 0.883571
Target:  5'- aCUGGcAGGCCAGGCAagUAGGGucgucccgGCGGCa -3'
miRNA:   3'- aGACCcUUCGGUCCGU--GUUCU--------UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.