miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 3' -52 NC_005264.1 + 115894 0.66 0.98469
Target:  5'- --cGGGggGCCAGuGaGCAAcgccaaggagacGAGCGGCg -3'
miRNA:   3'- agaCCCuuCGGUC-CgUGUU------------CUUGUUG- -5'
24359 3' -52 NC_005264.1 + 123386 0.67 0.963734
Target:  5'- cCUGuuGGAGGCguGGUGCGAGAuGCAGa -3'
miRNA:   3'- aGAC--CCUUCGguCCGUGUUCU-UGUUg -5'
24359 3' -52 NC_005264.1 + 41368 0.67 0.963734
Target:  5'- cUCcGGGAAGaaCGGGCACAcGGACGu- -3'
miRNA:   3'- -AGaCCCUUCg-GUCCGUGUuCUUGUug -5'
24359 3' -52 NC_005264.1 + 138578 1.1 0.00512
Target:  5'- cUCUGGGAAGCCAGGCACAAGAACAACu -3'
miRNA:   3'- -AGACCCUUCGGUCCGUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 43583 0.66 0.982755
Target:  5'- gCUGuGgcGCCAGGCAC-GGAaaGCGAUc -3'
miRNA:   3'- aGACcCuuCGGUCCGUGuUCU--UGUUG- -5'
24359 3' -52 NC_005264.1 + 38353 0.66 0.981509
Target:  5'- gCUGGGcGGCgGGGCGguUaggaccuccuccggcGAGAGCGGCg -3'
miRNA:   3'- aGACCCuUCGgUCCGU--G---------------UUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 30028 0.66 0.978341
Target:  5'- gCUGcGGAGGUUAGGCAaauggGGGAAuCGGCu -3'
miRNA:   3'- aGAC-CCUUCGGUCCGUg----UUCUU-GUUG- -5'
24359 3' -52 NC_005264.1 + 8765 0.66 0.975843
Target:  5'- cUCUGGGGAGaggcgaacggCGGGCGuCGgccAGGACGGCc -3'
miRNA:   3'- -AGACCCUUCg---------GUCCGU-GU---UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 132392 0.67 0.970227
Target:  5'- aCUGGuGAacguGGCCgcAGGCACGAGcuACAAg -3'
miRNA:   3'- aGACC-CU----UCGG--UCCGUGUUCu-UGUUg -5'
24359 3' -52 NC_005264.1 + 44881 0.67 0.965105
Target:  5'- cCUGGGGAGgCGGGCccgucgucgucugggGCGGGAGgAGa -3'
miRNA:   3'- aGACCCUUCgGUCCG---------------UGUUCUUgUUg -5'
24359 3' -52 NC_005264.1 + 3299 0.67 0.970227
Target:  5'- --cGGGGAGUgAGGgGCuuccGAACGGCg -3'
miRNA:   3'- agaCCCUUCGgUCCgUGuu--CUUGUUG- -5'
24359 3' -52 NC_005264.1 + 88545 0.67 0.973141
Target:  5'- aCUGuGgcGCCgcAGGUACGAGAucGCGGCg -3'
miRNA:   3'- aGACcCuuCGG--UCCGUGUUCU--UGUUG- -5'
24359 3' -52 NC_005264.1 + 56918 0.66 0.982755
Target:  5'- -aUGGGGcggcguacguGCguGGCGCAcGGGGCGACg -3'
miRNA:   3'- agACCCUu---------CGguCCGUGU-UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 139738 0.67 0.970227
Target:  5'- gUUGGGAGG-CGGGCgGCA--GACAACg -3'
miRNA:   3'- aGACCCUUCgGUCCG-UGUucUUGUUG- -5'
24359 3' -52 NC_005264.1 + 88233 0.66 0.982755
Target:  5'- --gGGGAacguggGGUCAGGCGCGGGGuCAu- -3'
miRNA:   3'- agaCCCU------UCGGUCCGUGUUCUuGUug -5'
24359 3' -52 NC_005264.1 + 124755 0.67 0.973141
Target:  5'- --cGGGggGCCAaggaagcacGGCGgguaggcauugUGAGAGCGGCg -3'
miRNA:   3'- agaCCCuuCGGU---------CCGU-----------GUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 53308 0.67 0.966768
Target:  5'- --cGGGAAGUCugcccagGGGCugcuuggccaGCAGGGGCAGCc -3'
miRNA:   3'- agaCCCUUCGG-------UCCG----------UGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 103698 0.67 0.963734
Target:  5'- --gGGGAAGUUgaGGGC-CAguGGAGCGGCg -3'
miRNA:   3'- agaCCCUUCGG--UCCGuGU--UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 68192 0.66 0.982755
Target:  5'- gUUUGGGcuuGGUUAGGUACAGGuauauccuCAGCg -3'
miRNA:   3'- -AGACCCu--UCGGUCCGUGUUCuu------GUUG- -5'
24359 3' -52 NC_005264.1 + 2947 0.66 0.980642
Target:  5'- --cGGGAagacGGCgAGGaagaugACGAGGACGACg -3'
miRNA:   3'- agaCCCU----UCGgUCCg-----UGUUCUUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.