Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24359 | 3' | -52 | NC_005264.1 | + | 39314 | 0.66 | 0.975843 |
Target: 5'- aUUGGGAucuCUAGGCACuuGGACAccGCg -3' miRNA: 3'- aGACCCUuc-GGUCCGUGuuCUUGU--UG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 127791 | 0.66 | 0.975843 |
Target: 5'- cUCUGGGGAGaggcgaacggCGGGCGuCGgccAGGACGGCc -3' miRNA: 3'- -AGACCCUUCg---------GUCCGU-GU---UCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 79211 | 0.66 | 0.975843 |
Target: 5'- cCUGGG--GCUAGGCugcguGCAGGcGGCGGCg -3' miRNA: 3'- aGACCCuuCGGUCCG-----UGUUC-UUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 50406 | 0.66 | 0.975843 |
Target: 5'- --aGGGggGUgGauauGGUacGCAAGAGCAACu -3' miRNA: 3'- agaCCCuuCGgU----CCG--UGUUCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 136363 | 0.67 | 0.973141 |
Target: 5'- gCUGGGcgcuGCC-GGCGCGaauagcgcuguGGAGCGAUg -3' miRNA: 3'- aGACCCuu--CGGuCCGUGU-----------UCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 124755 | 0.67 | 0.973141 |
Target: 5'- --cGGGggGCCAaggaagcacGGCGgguaggcauugUGAGAGCGGCg -3' miRNA: 3'- agaCCCuuCGGU---------CCGU-----------GUUCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 88545 | 0.67 | 0.973141 |
Target: 5'- aCUGuGgcGCCgcAGGUACGAGAucGCGGCg -3' miRNA: 3'- aGACcCuuCGG--UCCGUGUUCU--UGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 12765 | 0.67 | 0.970227 |
Target: 5'- -aUGGGGcagcGCCGGGCACA---ACGAUg -3' miRNA: 3'- agACCCUu---CGGUCCGUGUucuUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 132392 | 0.67 | 0.970227 |
Target: 5'- aCUGGuGAacguGGCCgcAGGCACGAGcuACAAg -3' miRNA: 3'- aGACC-CU----UCGG--UCCGUGUUCu-UGUUg -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 64762 | 0.67 | 0.970227 |
Target: 5'- --gGGGcGGCCgGGGCACAccauGCAACa -3' miRNA: 3'- agaCCCuUCGG-UCCGUGUucu-UGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 3299 | 0.67 | 0.970227 |
Target: 5'- --cGGGGAGUgAGGgGCuuccGAACGGCg -3' miRNA: 3'- agaCCCUUCGgUCCgUGuu--CUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 139738 | 0.67 | 0.970227 |
Target: 5'- gUUGGGAGG-CGGGCgGCA--GACAACg -3' miRNA: 3'- aGACCCUUCgGUCCG-UGUucUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 19416 | 0.67 | 0.970227 |
Target: 5'- --gGGGAGGCgAGGCGCcGGGugugGCcGCg -3' miRNA: 3'- agaCCCUUCGgUCCGUGuUCU----UGuUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 122326 | 0.67 | 0.970227 |
Target: 5'- --cGGGGAGUgAGGgGCuuccGAACGGCg -3' miRNA: 3'- agaCCCUUCGgUCCgUGuu--CUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 53308 | 0.67 | 0.966768 |
Target: 5'- --cGGGAAGUCugcccagGGGCugcuuggccaGCAGGGGCAGCc -3' miRNA: 3'- agaCCCUUCGG-------UCCG----------UGUUCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 44881 | 0.67 | 0.965105 |
Target: 5'- cCUGGGGAGgCGGGCccgucgucgucugggGCGGGAGgAGa -3' miRNA: 3'- aGACCCUUCgGUCCG---------------UGUUCUUgUUg -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 160395 | 0.67 | 0.963734 |
Target: 5'- cUCcGGGAAGaaCGGGCACAcGGACGu- -3' miRNA: 3'- -AGaCCCUUCg-GUCCGUGUuCUUGUug -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 18525 | 0.67 | 0.963734 |
Target: 5'- aUCgGGGgcGCCgucucccccugaGGGCGCGccggcgucagucGGAGCGGCa -3' miRNA: 3'- -AGaCCCuuCGG------------UCCGUGU------------UCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 103698 | 0.67 | 0.963734 |
Target: 5'- --gGGGAAGUUgaGGGC-CAguGGAGCGGCg -3' miRNA: 3'- agaCCCUUCGG--UCCGuGU--UCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 123386 | 0.67 | 0.963734 |
Target: 5'- cCUGuuGGAGGCguGGUGCGAGAuGCAGa -3' miRNA: 3'- aGAC--CCUUCGguCCGUGUUCU-UGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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