Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24359 | 5' | -56.9 | NC_005264.1 | + | 153473 | 0.76 | 0.335224 |
Target: 5'- gUUAgUGUCCCGGgGCGUUGGagguggUCGGg -3' miRNA: 3'- -AAUgAUAGGGCCgCGCGACCga----AGCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 60992 | 0.66 | 0.883429 |
Target: 5'- -gACUAUCgCGGCcuCGUUcucugccucGGCUUCGGc -3' miRNA: 3'- aaUGAUAGgGCCGc-GCGA---------CCGAAGCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 53274 | 0.66 | 0.869124 |
Target: 5'- cUUGCUGUCCCgcGGCGCcGCaguuUGGUUgccaGGa -3' miRNA: 3'- -AAUGAUAGGG--CCGCG-CG----ACCGAag--CC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 106452 | 0.67 | 0.812748 |
Target: 5'- -gGCUucggaGGCGCGCUGG-UUCGGa -3' miRNA: 3'- aaUGAuagggCCGCGCGACCgAAGCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 6901 | 0.68 | 0.786004 |
Target: 5'- -cGCaGUCCCaGCGCGC-GGCUUuccgUGGg -3' miRNA: 3'- aaUGaUAGGGcCGCGCGaCCGAA----GCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 58205 | 0.69 | 0.748471 |
Target: 5'- uUUAgUGUucCCCGcGCGCGCUGGUUg-GGa -3' miRNA: 3'- -AAUgAUA--GGGC-CGCGCGACCGAagCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 117426 | 0.72 | 0.577738 |
Target: 5'- -gGCUGUCgCGGCGCGCagGGCgcCGc -3' miRNA: 3'- aaUGAUAGgGCCGCGCGa-CCGaaGCc -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 128898 | 0.72 | 0.577738 |
Target: 5'- -gGCgcgGUCCCGGCGCGCcacGGcCUUCc- -3' miRNA: 3'- aaUGa--UAGGGCCGCGCGa--CC-GAAGcc -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 36085 | 0.72 | 0.57673 |
Target: 5'- -cGCUGUCCCucucuucGGCGCgGCUGGCagaUGGg -3' miRNA: 3'- aaUGAUAGGG-------CCGCG-CGACCGaa-GCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 34127 | 0.72 | 0.547707 |
Target: 5'- -cGCUG-CCUcuggugacgGGCGCGUaGGCUUCGGg -3' miRNA: 3'- aaUGAUaGGG---------CCGCGCGaCCGAAGCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 122094 | 0.72 | 0.537803 |
Target: 5'- -cGCUGUCUCGcCGCGaCUGGCggCGGc -3' miRNA: 3'- aaUGAUAGGGCcGCGC-GACCGaaGCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 93481 | 0.72 | 0.537803 |
Target: 5'- -cGCUGUCUgaGGCGCuGCUGGCggcCGGc -3' miRNA: 3'- aaUGAUAGGg-CCGCG-CGACCGaa-GCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 109341 | 0.7 | 0.689319 |
Target: 5'- -cACUAccUCCCGGCGCauggGGCUUCu- -3' miRNA: 3'- aaUGAU--AGGGCCGCGcga-CCGAAGcc -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 64848 | 0.69 | 0.738812 |
Target: 5'- gUACUGgaucCCCGGUGCGCgGGCg---- -3' miRNA: 3'- aAUGAUa---GGGCCGCGCGaCCGaagcc -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 67748 | 0.68 | 0.758029 |
Target: 5'- -cGCgUAUCUCGGCGCaggucgcaguuGCgUGGCUUgGGg -3' miRNA: 3'- aaUG-AUAGGGCCGCG-----------CG-ACCGAAgCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 126260 | 0.68 | 0.767476 |
Target: 5'- aUACcAUCCUgGGCGUGUUGGUccgCGGa -3' miRNA: 3'- aAUGaUAGGG-CCGCGCGACCGaa-GCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 120763 | 0.68 | 0.775877 |
Target: 5'- ---aUAUCCCGGCGCaGCUGacgccacGCgccgCGGg -3' miRNA: 3'- aaugAUAGGGCCGCG-CGAC-------CGaa--GCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 22314 | 0.68 | 0.795067 |
Target: 5'- -aGCUGUagUCUGGCGCGCggGGCaaUGGg -3' miRNA: 3'- aaUGAUA--GGGCCGCGCGa-CCGaaGCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 61420 | 0.68 | 0.803985 |
Target: 5'- -aGCgacaaCCGGCGCGCUGGUgguaUUCa- -3' miRNA: 3'- aaUGauag-GGCCGCGCGACCG----AAGcc -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 138621 | 1.07 | 0.0033 |
Target: 5'- cUUACUAUCCCGGCGCGCUGGCUUCGGc -3' miRNA: 3'- -AAUGAUAGGGCCGCGCGACCGAAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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