miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 5' -56.9 NC_005264.1 + 67748 0.68 0.758029
Target:  5'- -cGCgUAUCUCGGCGCaggucgcaguuGCgUGGCUUgGGg -3'
miRNA:   3'- aaUG-AUAGGGCCGCG-----------CG-ACCGAAgCC- -5'
24359 5' -56.9 NC_005264.1 + 126260 0.68 0.767476
Target:  5'- aUACcAUCCUgGGCGUGUUGGUccgCGGa -3'
miRNA:   3'- aAUGaUAGGG-CCGCGCGACCGaa-GCC- -5'
24359 5' -56.9 NC_005264.1 + 120763 0.68 0.775877
Target:  5'- ---aUAUCCCGGCGCaGCUGacgccacGCgccgCGGg -3'
miRNA:   3'- aaugAUAGGGCCGCG-CGAC-------CGaa--GCC- -5'
24359 5' -56.9 NC_005264.1 + 22314 0.68 0.795067
Target:  5'- -aGCUGUagUCUGGCGCGCggGGCaaUGGg -3'
miRNA:   3'- aaUGAUA--GGGCCGCGCGa-CCGaaGCC- -5'
24359 5' -56.9 NC_005264.1 + 61420 0.68 0.803985
Target:  5'- -aGCgacaaCCGGCGCGCUGGUgguaUUCa- -3'
miRNA:   3'- aaUGauag-GGCCGCGCGACCG----AAGcc -5'
24359 5' -56.9 NC_005264.1 + 62061 0.67 0.812748
Target:  5'- -----uUUgCGGCGCGCaUGGCUUgGGc -3'
miRNA:   3'- aaugauAGgGCCGCGCG-ACCGAAgCC- -5'
24359 5' -56.9 NC_005264.1 + 138621 1.07 0.0033
Target:  5'- cUUACUAUCCCGGCGCGCUGGCUUCGGc -3'
miRNA:   3'- -AAUGAUAGGGCCGCGCGACCGAAGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.