Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24359 | 5' | -56.9 | NC_005264.1 | + | 6901 | 0.68 | 0.786004 |
Target: 5'- -cGCaGUCCCaGCGCGC-GGCUUuccgUGGg -3' miRNA: 3'- aaUGaUAGGGcCGCGCGaCCGAA----GCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 22314 | 0.68 | 0.795067 |
Target: 5'- -aGCUGUagUCUGGCGCGCggGGCaaUGGg -3' miRNA: 3'- aaUGAUA--GGGCCGCGCGa-CCGaaGCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 61420 | 0.68 | 0.803985 |
Target: 5'- -aGCgacaaCCGGCGCGCUGGUgguaUUCa- -3' miRNA: 3'- aaUGauag-GGCCGCGCGACCG----AAGcc -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 62061 | 0.67 | 0.812748 |
Target: 5'- -----uUUgCGGCGCGCaUGGCUUgGGc -3' miRNA: 3'- aaugauAGgGCCGCGCG-ACCGAAgCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 106452 | 0.67 | 0.812748 |
Target: 5'- -gGCUucggaGGCGCGCUGG-UUCGGa -3' miRNA: 3'- aaUGAuagggCCGCGCGACCgAAGCC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 53274 | 0.66 | 0.869124 |
Target: 5'- cUUGCUGUCCCgcGGCGCcGCaguuUGGUUgccaGGa -3' miRNA: 3'- -AAUGAUAGGG--CCGCG-CG----ACCGAag--CC- -5' |
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24359 | 5' | -56.9 | NC_005264.1 | + | 60992 | 0.66 | 0.883429 |
Target: 5'- -gACUAUCgCGGCcuCGUUcucugccucGGCUUCGGc -3' miRNA: 3'- aaUGAUAGgGCCGc-GCGA---------CCGAAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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