miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 3' -51.4 NC_005264.1 + 54342 0.68 0.970333
Target:  5'- gCGCGGCguuUAUGgcGAGCcuuaGAAGCgUCg -3'
miRNA:   3'- -GCGCUGau-AUGCuuCUCG----CUUCGgAG- -5'
24360 3' -51.4 NC_005264.1 + 74253 0.68 0.967238
Target:  5'- gCGCuccaGACacgGCGGuAGAgGCGggGCCUCa -3'
miRNA:   3'- -GCG----CUGauaUGCU-UCU-CGCuuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 147153 0.68 0.967238
Target:  5'- gGCGuuCUGUGCGAGGAGCauuuuGggGCa-- -3'
miRNA:   3'- gCGCu-GAUAUGCUUCUCG-----CuuCGgag -5'
24360 3' -51.4 NC_005264.1 + 4886 0.68 0.967238
Target:  5'- aGCGACac-GCGGAGuuCGAGGCCa- -3'
miRNA:   3'- gCGCUGauaUGCUUCucGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 29124 0.68 0.967238
Target:  5'- cCGaGGCUGUACcuGAGGAGCGcguGGCCg- -3'
miRNA:   3'- -GCgCUGAUAUG--CUUCUCGCu--UCGGag -5'
24360 3' -51.4 NC_005264.1 + 14535 0.68 0.967238
Target:  5'- aCGCGAUgacucUGCGAAGcGUGGAGCUg- -3'
miRNA:   3'- -GCGCUGau---AUGCUUCuCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 29280 0.68 0.963922
Target:  5'- --gGACUGUGCGc-GGGCGcguGCCUCg -3'
miRNA:   3'- gcgCUGAUAUGCuuCUCGCuu-CGGAG- -5'
24360 3' -51.4 NC_005264.1 + 157647 0.68 0.963922
Target:  5'- uCGCGGCUuc-CGAAGuuucggccGCGAgGGCCUCc -3'
miRNA:   3'- -GCGCUGAuauGCUUCu-------CGCU-UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 91033 0.69 0.960377
Target:  5'- cCGCGuaUGUGCGAAcacGAGCGAgaAGCCg- -3'
miRNA:   3'- -GCGCugAUAUGCUU---CUCGCU--UCGGag -5'
24360 3' -51.4 NC_005264.1 + 2511 0.69 0.9566
Target:  5'- gCGCGACUucagcGCGggGGGCGA--CUUCc -3'
miRNA:   3'- -GCGCUGAua---UGCuuCUCGCUucGGAG- -5'
24360 3' -51.4 NC_005264.1 + 121538 0.69 0.9566
Target:  5'- gCGCGACUucagcGCGggGGGCGA--CUUCc -3'
miRNA:   3'- -GCGCUGAua---UGCuuCUCGCUucGGAG- -5'
24360 3' -51.4 NC_005264.1 + 156590 0.69 0.952584
Target:  5'- gGCGACgaccgcgACGGAG-GCGGcaAGUCUCg -3'
miRNA:   3'- gCGCUGaua----UGCUUCuCGCU--UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 126291 0.69 0.952584
Target:  5'- gGuCGGCgccaggACGAAGAcgGCGggGCCUa -3'
miRNA:   3'- gC-GCUGaua---UGCUUCU--CGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 7264 0.69 0.952584
Target:  5'- gGuCGGCgccaggACGAAGAcgGCGggGCCUa -3'
miRNA:   3'- gC-GCUGaua---UGCUUCU--CGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 121505 0.69 0.952584
Target:  5'- uCGCGGCUGcuucgACGAuggucGGCG-GGCCUCg -3'
miRNA:   3'- -GCGCUGAUa----UGCUuc---UCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 37563 0.69 0.952584
Target:  5'- gGCGACgaccgcgACGGAG-GCGGcaAGUCUCg -3'
miRNA:   3'- gCGCUGaua----UGCUUCuCGCU--UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 2478 0.69 0.952584
Target:  5'- uCGCGGCUGcuucgACGAuggucGGCG-GGCCUCg -3'
miRNA:   3'- -GCGCUGAUa----UGCUuc---UCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 156175 0.69 0.948325
Target:  5'- gCGCGGCUuUGCGgcGuGGCGgcGCCg- -3'
miRNA:   3'- -GCGCUGAuAUGCuuC-UCGCuuCGGag -5'
24360 3' -51.4 NC_005264.1 + 79446 0.69 0.948325
Target:  5'- cCGCGGCgcgcagACGAcGAGCGGcagcugGGCUUCu -3'
miRNA:   3'- -GCGCUGaua---UGCUuCUCGCU------UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 26378 0.69 0.948325
Target:  5'- gCGCGGCgc--CGucucuGAGCGcGGCCUCa -3'
miRNA:   3'- -GCGCUGauauGCuu---CUCGCuUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.