miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 3' -51.4 NC_005264.1 + 6471 0.67 0.984649
Target:  5'- gCGCGGCgaacguCGggGuGCGcGGCCaUCg -3'
miRNA:   3'- -GCGCUGauau--GCuuCuCGCuUCGG-AG- -5'
24360 3' -51.4 NC_005264.1 + 22533 0.67 0.984092
Target:  5'- uGCauGGCUGgGCGggGAaagauacagaaaccGCGAguAGCCUCg -3'
miRNA:   3'- gCG--CUGAUaUGCuuCU--------------CGCU--UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 17282 0.67 0.98273
Target:  5'- gGCGACgggGCGGAGGGCu--GCC-Ca -3'
miRNA:   3'- gCGCUGauaUGCUUCUCGcuuCGGaG- -5'
24360 3' -51.4 NC_005264.1 + 113042 0.67 0.98273
Target:  5'- cCGCGACUGggccgcgGCGAucuuacgcGAGaCGGAcauGCCUCg -3'
miRNA:   3'- -GCGCUGAUa------UGCUu-------CUC-GCUU---CGGAG- -5'
24360 3' -51.4 NC_005264.1 + 77126 0.67 0.982529
Target:  5'- gCGCGGCgcagACGGAuGAGCGAAucuacauGCCg- -3'
miRNA:   3'- -GCGCUGaua-UGCUU-CUCGCUU-------CGGag -5'
24360 3' -51.4 NC_005264.1 + 52756 0.67 0.981495
Target:  5'- gGCGAggGUACGAuauguuaggcugccuGGAGCGAuGCUUUc -3'
miRNA:   3'- gCGCUgaUAUGCU---------------UCUCGCUuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 97527 0.67 0.980635
Target:  5'- cCGCGGCUGUgGCGuGGcAGCGGgcaagAGCCa- -3'
miRNA:   3'- -GCGCUGAUA-UGCuUC-UCGCU-----UCGGag -5'
24360 3' -51.4 NC_005264.1 + 27661 0.67 0.980635
Target:  5'- aCGCGGCgcucggacCGAGGuacGCGGcuGGCCUCu -3'
miRNA:   3'- -GCGCUGauau----GCUUCu--CGCU--UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 83005 0.67 0.97929
Target:  5'- gGCGGguuCUGUugGAGGGgcauguuucgucgccGCaGggGCCUCg -3'
miRNA:   3'- gCGCU---GAUAugCUUCU---------------CG-CuuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 31664 0.67 0.978356
Target:  5'- aCGCGaACUGcGCGAGGcagggcucucGGCGggGCUg- -3'
miRNA:   3'- -GCGC-UGAUaUGCUUC----------UCGCuuCGGag -5'
24360 3' -51.4 NC_005264.1 + 37358 0.67 0.978356
Target:  5'- cCGCG-CUcgAaaAAGAGCGA-GCCUCc -3'
miRNA:   3'- -GCGCuGAuaUgcUUCUCGCUuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 55259 0.68 0.975885
Target:  5'- uGCGACcgccACGAAGAGCuGggGCg-- -3'
miRNA:   3'- gCGCUGaua-UGCUUCUCG-CuuCGgag -5'
24360 3' -51.4 NC_005264.1 + 156520 0.68 0.975885
Target:  5'- uGCGugU--ACGccacGCGAAGCCUCg -3'
miRNA:   3'- gCGCugAuaUGCuucuCGCUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 115581 0.68 0.975885
Target:  5'- -cUGACUAU-CGAuccggaGGAGUGggGCCUg -3'
miRNA:   3'- gcGCUGAUAuGCU------UCUCGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 129604 0.68 0.973213
Target:  5'- uGCGGC---GCGgcG-GCGAAGCUUCu -3'
miRNA:   3'- gCGCUGauaUGCuuCuCGCUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 13959 0.68 0.973213
Target:  5'- aCGCGGCg--ACGAGGAgacgagcgagacGCGggGUCg- -3'
miRNA:   3'- -GCGCUGauaUGCUUCU------------CGCuuCGGag -5'
24360 3' -51.4 NC_005264.1 + 152609 0.68 0.973213
Target:  5'- aCGCGcccGCUAUugagccCGAGGccAGCGAGGCCg- -3'
miRNA:   3'- -GCGC---UGAUAu-----GCUUC--UCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 39345 0.68 0.97151
Target:  5'- gCGCGACUGUuucccgcccagaaucGCGcAGccaGAGGCCUCa -3'
miRNA:   3'- -GCGCUGAUA---------------UGCuUCucgCUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 158372 0.68 0.97151
Target:  5'- gCGCGACUGUuucccgcccagaaucGCGcAGccaGAGGCCUCa -3'
miRNA:   3'- -GCGCUGAUA---------------UGCuUCucgCUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 54342 0.68 0.970333
Target:  5'- gCGCGGCguuUAUGgcGAGCcuuaGAAGCgUCg -3'
miRNA:   3'- -GCGCUGau-AUGCuuCUCG----CUUCGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.