miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 3' -51.4 NC_005264.1 + 29280 0.68 0.963922
Target:  5'- --gGACUGUGCGc-GGGCGcguGCCUCg -3'
miRNA:   3'- gcgCUGAUAUGCuuCUCGCuu-CGGAG- -5'
24360 3' -51.4 NC_005264.1 + 30409 0.73 0.812076
Target:  5'- gCGCGcCgGUGCGGAGAGCugcggcggagGAGGUCUCg -3'
miRNA:   3'- -GCGCuGaUAUGCUUCUCG----------CUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 31051 0.74 0.755367
Target:  5'- uGCGGCUGcguUGCGGAcggcaggcGAGCGA-GCCUCc -3'
miRNA:   3'- gCGCUGAU---AUGCUU--------CUCGCUuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 31664 0.67 0.978356
Target:  5'- aCGCGaACUGcGCGAGGcagggcucucGGCGggGCUg- -3'
miRNA:   3'- -GCGC-UGAUaUGCUUC----------UCGCuuCGGag -5'
24360 3' -51.4 NC_005264.1 + 33666 0.66 0.992979
Target:  5'- gGUGGCggGUAUGAaucuGGGGCGGAGgCUg -3'
miRNA:   3'- gCGCUGa-UAUGCU----UCUCGCUUCgGAg -5'
24360 3' -51.4 NC_005264.1 + 34544 0.66 0.989443
Target:  5'- gGCGGg-GUACGugagGGaAGCGggGCCUa -3'
miRNA:   3'- gCGCUgaUAUGCu---UC-UCGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 35009 0.66 0.990749
Target:  5'- aGCGGCgcucgaaGAGGAGCGcuGGCCg- -3'
miRNA:   3'- gCGCUGauaug--CUUCUCGCu-UCGGag -5'
24360 3' -51.4 NC_005264.1 + 36491 0.78 0.568823
Target:  5'- gGCGGCguuuucGUGCGAAGcGCGcGGCCUCg -3'
miRNA:   3'- gCGCUGa-----UAUGCUUCuCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 37078 0.7 0.934064
Target:  5'- uGUGGCUGaGCGAAGAGUGGcccGCC-Ca -3'
miRNA:   3'- gCGCUGAUaUGCUUCUCGCUu--CGGaG- -5'
24360 3' -51.4 NC_005264.1 + 37358 0.67 0.978356
Target:  5'- cCGCG-CUcgAaaAAGAGCGA-GCCUCc -3'
miRNA:   3'- -GCGCuGAuaUgcUUCUCGCUuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 37563 0.69 0.952584
Target:  5'- gGCGACgaccgcgACGGAG-GCGGcaAGUCUCg -3'
miRNA:   3'- gCGCUGaua----UGCUUCuCGCU--UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 39221 0.66 0.990749
Target:  5'- cCGCGGCgcugGCGggGAG---GGCCUg -3'
miRNA:   3'- -GCGCUGaua-UGCuuCUCgcuUCGGAg -5'
24360 3' -51.4 NC_005264.1 + 39345 0.68 0.97151
Target:  5'- gCGCGACUGUuucccgcccagaaucGCGcAGccaGAGGCCUCa -3'
miRNA:   3'- -GCGCUGAUA---------------UGCuUCucgCUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 40787 0.73 0.803002
Target:  5'- cCGCGGC---GCcGAGAGCGGAGCCg- -3'
miRNA:   3'- -GCGCUGauaUGcUUCUCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 44977 0.79 0.497692
Target:  5'- aGCGGCgGUACGAAGAGgGcGAGCCUg -3'
miRNA:   3'- gCGCUGaUAUGCUUCUCgC-UUCGGAg -5'
24360 3' -51.4 NC_005264.1 + 45394 0.7 0.928808
Target:  5'- gCGCGGCaaacgAUGGAGGGCGgcGCCc- -3'
miRNA:   3'- -GCGCUGaua--UGCUUCUCGCuuCGGag -5'
24360 3' -51.4 NC_005264.1 + 48748 0.66 0.989443
Target:  5'- aGCGGCUcGUAacucagaGAGGAGCGGuacGCCg- -3'
miRNA:   3'- gCGCUGA-UAUg------CUUCUCGCUu--CGGag -5'
24360 3' -51.4 NC_005264.1 + 52104 0.67 0.986402
Target:  5'- gGCGAaggccGCGAAgcGAGCagGAGGCCUCc -3'
miRNA:   3'- gCGCUgaua-UGCUU--CUCG--CUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 52756 0.67 0.981495
Target:  5'- gGCGAggGUACGAuauguuaggcugccuGGAGCGAuGCUUUc -3'
miRNA:   3'- gCGCUgaUAUGCU---------------UCUCGCUuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 54342 0.68 0.970333
Target:  5'- gCGCGGCguuUAUGgcGAGCcuuaGAAGCgUCg -3'
miRNA:   3'- -GCGCUGau-AUGCuuCUCG----CUUCGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.