miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 3' -51.4 NC_005264.1 + 658 0.74 0.755367
Target:  5'- gGCGACUAaGCGAuGAGCcugacgGGAGCCUg -3'
miRNA:   3'- gCGCUGAUaUGCUuCUCG------CUUCGGAg -5'
24360 3' -51.4 NC_005264.1 + 2478 0.69 0.952584
Target:  5'- uCGCGGCUGcuucgACGAuggucGGCG-GGCCUCg -3'
miRNA:   3'- -GCGCUGAUa----UGCUuc---UCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 2511 0.69 0.9566
Target:  5'- gCGCGACUucagcGCGggGGGCGA--CUUCc -3'
miRNA:   3'- -GCGCUGAua---UGCuuCUCGCUucGGAG- -5'
24360 3' -51.4 NC_005264.1 + 2908 0.66 0.987997
Target:  5'- gGCGACg--GCG-AGAGCGAcggAGUCg- -3'
miRNA:   3'- gCGCUGauaUGCuUCUCGCU---UCGGag -5'
24360 3' -51.4 NC_005264.1 + 3670 0.7 0.934064
Target:  5'- gGCGACUGgcauuGGuGCGggGCCUg -3'
miRNA:   3'- gCGCUGAUaugcuUCuCGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 3737 0.82 0.345134
Target:  5'- --aGACg--ACGAGGAGCGggGCCUCu -3'
miRNA:   3'- gcgCUGauaUGCUUCUCGCuuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 4017 0.7 0.917536
Target:  5'- gGCuGACUGUagaGCGggG-GCaAGGCCUCg -3'
miRNA:   3'- gCG-CUGAUA---UGCuuCuCGcUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 4886 0.68 0.967238
Target:  5'- aGCGACac-GCGGAGuuCGAGGCCa- -3'
miRNA:   3'- gCGCUGauaUGCUUCucGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 5315 0.75 0.703828
Target:  5'- gGCGACUggcgggaGUACGggGAGaCGAAGCggucgCUCg -3'
miRNA:   3'- gCGCUGA-------UAUGCuuCUC-GCUUCG-----GAG- -5'
24360 3' -51.4 NC_005264.1 + 6471 0.67 0.984649
Target:  5'- gCGCGGCgaacguCGggGuGCGcGGCCaUCg -3'
miRNA:   3'- -GCGCUGauau--GCuuCuCGCuUCGG-AG- -5'
24360 3' -51.4 NC_005264.1 + 7264 0.69 0.952584
Target:  5'- gGuCGGCgccaggACGAAGAcgGCGggGCCUa -3'
miRNA:   3'- gC-GCUGaua---UGCUUCU--CGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 7660 0.66 0.991925
Target:  5'- uGcCGGCU---CGGAGGGCucGGCCUCc -3'
miRNA:   3'- gC-GCUGAuauGCUUCUCGcuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 13959 0.68 0.973213
Target:  5'- aCGCGGCg--ACGAGGAgacgagcgagacGCGggGUCg- -3'
miRNA:   3'- -GCGCUGauaUGCUUCU------------CGCuuCGGag -5'
24360 3' -51.4 NC_005264.1 + 14535 0.68 0.967238
Target:  5'- aCGCGAUgacucUGCGAAGcGUGGAGCUg- -3'
miRNA:   3'- -GCGCUGau---AUGCUUCuCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 17282 0.67 0.98273
Target:  5'- gGCGACgggGCGGAGGGCu--GCC-Ca -3'
miRNA:   3'- gCGCUGauaUGCUUCUCGcuuCGGaG- -5'
24360 3' -51.4 NC_005264.1 + 22533 0.67 0.984092
Target:  5'- uGCauGGCUGgGCGggGAaagauacagaaaccGCGAguAGCCUCg -3'
miRNA:   3'- gCG--CUGAUaUGCuuCU--------------CGCU--UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 22837 0.74 0.774836
Target:  5'- aGCGAgacggGUACGGAcGGGCGAGGCCg- -3'
miRNA:   3'- gCGCUga---UAUGCUU-CUCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 26378 0.69 0.948325
Target:  5'- gCGCGGCgc--CGucucuGAGCGcGGCCUCa -3'
miRNA:   3'- -GCGCUGauauGCuu---CUCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 27661 0.67 0.980635
Target:  5'- aCGCGGCgcucggacCGAGGuacGCGGcuGGCCUCu -3'
miRNA:   3'- -GCGCUGauau----GCUUCu--CGCU--UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 29124 0.68 0.967238
Target:  5'- cCGaGGCUGUACcuGAGGAGCGcguGGCCg- -3'
miRNA:   3'- -GCgCUGAUAUG--CUUCUCGCu--UCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.