miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 3' -51.4 NC_005264.1 + 158372 0.68 0.97151
Target:  5'- gCGCGACUGUuucccgcccagaaucGCGcAGccaGAGGCCUCa -3'
miRNA:   3'- -GCGCUGAUA---------------UGCuUCucgCUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 158248 0.66 0.990749
Target:  5'- cCGCGGCgcugGCGggGAG---GGCCUg -3'
miRNA:   3'- -GCGCUGaua-UGCuuCUCgcuUCGGAg -5'
24360 3' -51.4 NC_005264.1 + 157647 0.68 0.963922
Target:  5'- uCGCGGCUuc-CGAAGuuucggccGCGAgGGCCUCc -3'
miRNA:   3'- -GCGCUGAuauGCUUCu-------CGCU-UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 156590 0.69 0.952584
Target:  5'- gGCGACgaccgcgACGGAG-GCGGcaAGUCUCg -3'
miRNA:   3'- gCGCUGaua----UGCUUCuCGCU--UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 156520 0.68 0.975885
Target:  5'- uGCGugU--ACGccacGCGAAGCCUCg -3'
miRNA:   3'- gCGCugAuaUGCuucuCGCUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 156428 0.66 0.989443
Target:  5'- uGCGGCUG-GCGgcG-GUGAucGCCUCg -3'
miRNA:   3'- gCGCUGAUaUGCuuCuCGCUu-CGGAG- -5'
24360 3' -51.4 NC_005264.1 + 156175 0.69 0.948325
Target:  5'- gCGCGGCUuUGCGgcGuGGCGgcGCCg- -3'
miRNA:   3'- -GCGCUGAuAUGCuuC-UCGCuuCGGag -5'
24360 3' -51.4 NC_005264.1 + 156105 0.7 0.934064
Target:  5'- uGUGGCUGaGCGAAGAGUGGcccGCC-Ca -3'
miRNA:   3'- gCGCUGAUaUGCUUCUCGCUu--CGGaG- -5'
24360 3' -51.4 NC_005264.1 + 156024 0.66 0.992979
Target:  5'- gGCGACgcuUGCGc--GGUGGAcGCCUCa -3'
miRNA:   3'- gCGCUGau-AUGCuucUCGCUU-CGGAG- -5'
24360 3' -51.4 NC_005264.1 + 155685 0.73 0.829697
Target:  5'- gGUGACUcgGC--AGGGCGuAGCCUCa -3'
miRNA:   3'- gCGCUGAuaUGcuUCUCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 154693 0.68 0.970333
Target:  5'- aGCGGCgcagAUACcgcugucAAGAGCGAGGCUa- -3'
miRNA:   3'- gCGCUGa---UAUGc------UUCUCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 154036 0.66 0.990749
Target:  5'- aGCGGCgcucgaaGAGGAGCGcuGGCCg- -3'
miRNA:   3'- gCGCUGauaug--CUUCUCGCu-UCGGag -5'
24360 3' -51.4 NC_005264.1 + 153571 0.66 0.989443
Target:  5'- gGCGGg-GUACGugagGGaAGCGggGCCUa -3'
miRNA:   3'- gCGCUgaUAUGCu---UC-UCGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 152609 0.68 0.973213
Target:  5'- aCGCGcccGCUAUugagccCGAGGccAGCGAGGCCg- -3'
miRNA:   3'- -GCGC---UGAUAu-----GCUUC--UCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 150078 0.74 0.755367
Target:  5'- uGCGGCUGcguUGCGGAcggcaggcGAGCGA-GCCUCc -3'
miRNA:   3'- gCGCUGAU---AUGCUU--------CUCGCUuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 149436 0.73 0.812076
Target:  5'- gCGCGcCgGUGCGGAGAGCugcggcggagGAGGUCUCg -3'
miRNA:   3'- -GCGCuGaUAUGCUUCUCG----------CUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 147153 0.68 0.967238
Target:  5'- gGCGuuCUGUGCGAGGAGCauuuuGggGCa-- -3'
miRNA:   3'- gCGCu-GAUAUGCUUCUCG-----CuuCGgag -5'
24360 3' -51.4 NC_005264.1 + 137947 1.12 0.00561
Target:  5'- aCGCGACUAUACGAAGAGCGAAGCCUCg -3'
miRNA:   3'- -GCGCUGAUAUGCUUCUCGCUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 136575 0.66 0.991925
Target:  5'- gGUGGCgu--CGAAGAGCGGgucguagagagGGCCg- -3'
miRNA:   3'- gCGCUGauauGCUUCUCGCU-----------UCGGag -5'
24360 3' -51.4 NC_005264.1 + 129604 0.68 0.973213
Target:  5'- uGCGGC---GCGgcG-GCGAAGCUUCu -3'
miRNA:   3'- gCGCUGauaUGCuuCuCGCUUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.