miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 3' -51.4 NC_005264.1 + 137947 1.12 0.00561
Target:  5'- aCGCGACUAUACGAAGAGCGAAGCCUCg -3'
miRNA:   3'- -GCGCUGAUAUGCUUCUCGCUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 122752 0.88 0.163388
Target:  5'- uGCGACgaggaagacgACGAGGAGCGggGCCUCu -3'
miRNA:   3'- gCGCUGaua-------UGCUUCUCGCuuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 3737 0.82 0.345134
Target:  5'- --aGACg--ACGAGGAGCGggGCCUCu -3'
miRNA:   3'- gcgCUGauaUGCUUCUCGCuuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 44977 0.79 0.497692
Target:  5'- aGCGGCgGUACGAAGAGgGcGAGCCUg -3'
miRNA:   3'- gCGCUGaUAUGCUUCUCgC-UUCGGAg -5'
24360 3' -51.4 NC_005264.1 + 36491 0.78 0.568823
Target:  5'- gGCGGCguuuucGUGCGAAGcGCGcGGCCUCg -3'
miRNA:   3'- gCGCUGa-----UAUGCUUCuCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 124342 0.75 0.703828
Target:  5'- gGCGACUggcgggaGUACGggGAGaCGAAGCggucgCUCg -3'
miRNA:   3'- gCGCUGA-------UAUGCuuCUC-GCUUCG-----GAG- -5'
24360 3' -51.4 NC_005264.1 + 5315 0.75 0.703828
Target:  5'- gGCGACUggcgggaGUACGggGAGaCGAAGCggucgCUCg -3'
miRNA:   3'- gCGCUGA-------UAUGCuuCUC-GCUUCG-----GAG- -5'
24360 3' -51.4 NC_005264.1 + 31051 0.74 0.755367
Target:  5'- uGCGGCUGcguUGCGGAcggcaggcGAGCGA-GCCUCc -3'
miRNA:   3'- gCGCUGAU---AUGCUU--------CUCGCUuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 658 0.74 0.755367
Target:  5'- gGCGACUAaGCGAuGAGCcugacgGGAGCCUg -3'
miRNA:   3'- gCGCUGAUaUGCUuCUCG------CUUCGGAg -5'
24360 3' -51.4 NC_005264.1 + 150078 0.74 0.755367
Target:  5'- uGCGGCUGcguUGCGGAcggcaggcGAGCGA-GCCUCc -3'
miRNA:   3'- gCGCUGAU---AUGCUU--------CUCGCUuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 22837 0.74 0.774836
Target:  5'- aGCGAgacggGUACGGAcGGGCGAGGCCg- -3'
miRNA:   3'- gCGCUga---UAUGCUU-CUCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 40787 0.73 0.803002
Target:  5'- cCGCGGC---GCcGAGAGCGGAGCCg- -3'
miRNA:   3'- -GCGCUGauaUGcUUCUCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 30409 0.73 0.812076
Target:  5'- gCGCGcCgGUGCGGAGAGCugcggcggagGAGGUCUCg -3'
miRNA:   3'- -GCGCuGaUAUGCUUCUCG----------CUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 149436 0.73 0.812076
Target:  5'- gCGCGcCgGUGCGGAGAGCugcggcggagGAGGUCUCg -3'
miRNA:   3'- -GCGCuGaUAUGCUUCUCG----------CUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 155685 0.73 0.829697
Target:  5'- gGUGACUcgGC--AGGGCGuAGCCUCa -3'
miRNA:   3'- gCGCUGAuaUGcuUCUCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 95352 0.72 0.838227
Target:  5'- aCG-GACUcgGCGggGcGGCGGcccGGCCUCg -3'
miRNA:   3'- -GCgCUGAuaUGCuuC-UCGCU---UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 55860 0.72 0.854684
Target:  5'- gGCGuCUAUGCGGcuccuGGCGAuGGCCUCa -3'
miRNA:   3'- gCGCuGAUAUGCUuc---UCGCU-UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 93407 0.72 0.870289
Target:  5'- gCGCGGCUAUAagGAAGGGgcaaccCGGAGCCa- -3'
miRNA:   3'- -GCGCUGAUAUg-CUUCUC------GCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 80246 0.71 0.891989
Target:  5'- uCGCGAUUGUcacgccuugAgGgcGAGCGAGGCCg- -3'
miRNA:   3'- -GCGCUGAUA---------UgCuuCUCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 84093 0.71 0.911522
Target:  5'- uCGCGGCUAUugacACGGAGAacaaCGAAGaCCUUa -3'
miRNA:   3'- -GCGCUGAUA----UGCUUCUc---GCUUC-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.