miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 3' -51.4 NC_005264.1 + 4017 0.7 0.917536
Target:  5'- gGCuGACUGUagaGCGggG-GCaAGGCCUCg -3'
miRNA:   3'- gCG-CUGAUA---UGCuuCuCGcUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 45394 0.7 0.928808
Target:  5'- gCGCGGCaaacgAUGGAGGGCGgcGCCc- -3'
miRNA:   3'- -GCGCUGaua--UGCUUCUCGCuuCGGag -5'
24360 3' -51.4 NC_005264.1 + 156105 0.7 0.934064
Target:  5'- uGUGGCUGaGCGAAGAGUGGcccGCC-Ca -3'
miRNA:   3'- gCGCUGAUaUGCUUCUCGCUu--CGGaG- -5'
24360 3' -51.4 NC_005264.1 + 112595 0.7 0.934064
Target:  5'- cCGCGGCagGUGCacaaacuGGGAGCGggGCC-Cg -3'
miRNA:   3'- -GCGCUGa-UAUGc------UUCUCGCuuCGGaG- -5'
24360 3' -51.4 NC_005264.1 + 3670 0.7 0.934064
Target:  5'- gGCGACUGgcauuGGuGCGggGCCUg -3'
miRNA:   3'- gCGCUGAUaugcuUCuCGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 37078 0.7 0.934064
Target:  5'- uGUGGCUGaGCGAAGAGUGGcccGCC-Ca -3'
miRNA:   3'- gCGCUGAUaUGCUUCUCGCUu--CGGaG- -5'
24360 3' -51.4 NC_005264.1 + 120491 0.69 0.943821
Target:  5'- gCGCGGagUAggugGCGggG-GCGAGGcCCUCa -3'
miRNA:   3'- -GCGCUg-AUa---UGCuuCuCGCUUC-GGAG- -5'
24360 3' -51.4 NC_005264.1 + 26378 0.69 0.948325
Target:  5'- gCGCGGCgc--CGucucuGAGCGcGGCCUCa -3'
miRNA:   3'- -GCGCUGauauGCuu---CUCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 79446 0.69 0.948325
Target:  5'- cCGCGGCgcgcagACGAcGAGCGGcagcugGGCUUCu -3'
miRNA:   3'- -GCGCUGaua---UGCUuCUCGCU------UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 156175 0.69 0.948325
Target:  5'- gCGCGGCUuUGCGgcGuGGCGgcGCCg- -3'
miRNA:   3'- -GCGCUGAuAUGCuuC-UCGCuuCGGag -5'
24360 3' -51.4 NC_005264.1 + 37563 0.69 0.952584
Target:  5'- gGCGACgaccgcgACGGAG-GCGGcaAGUCUCg -3'
miRNA:   3'- gCGCUGaua----UGCUUCuCGCU--UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 2478 0.69 0.952584
Target:  5'- uCGCGGCUGcuucgACGAuggucGGCG-GGCCUCg -3'
miRNA:   3'- -GCGCUGAUa----UGCUuc---UCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 121505 0.69 0.952584
Target:  5'- uCGCGGCUGcuucgACGAuggucGGCG-GGCCUCg -3'
miRNA:   3'- -GCGCUGAUa----UGCUuc---UCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 156590 0.69 0.952584
Target:  5'- gGCGACgaccgcgACGGAG-GCGGcaAGUCUCg -3'
miRNA:   3'- gCGCUGaua----UGCUUCuCGCU--UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 126291 0.69 0.952584
Target:  5'- gGuCGGCgccaggACGAAGAcgGCGggGCCUa -3'
miRNA:   3'- gC-GCUGaua---UGCUUCU--CGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 7264 0.69 0.952584
Target:  5'- gGuCGGCgccaggACGAAGAcgGCGggGCCUa -3'
miRNA:   3'- gC-GCUGaua---UGCUUCU--CGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 2511 0.69 0.9566
Target:  5'- gCGCGACUucagcGCGggGGGCGA--CUUCc -3'
miRNA:   3'- -GCGCUGAua---UGCuuCUCGCUucGGAG- -5'
24360 3' -51.4 NC_005264.1 + 121538 0.69 0.9566
Target:  5'- gCGCGACUucagcGCGggGGGCGA--CUUCc -3'
miRNA:   3'- -GCGCUGAua---UGCuuCUCGCUucGGAG- -5'
24360 3' -51.4 NC_005264.1 + 91033 0.69 0.960377
Target:  5'- cCGCGuaUGUGCGAAcacGAGCGAgaAGCCg- -3'
miRNA:   3'- -GCGCugAUAUGCUU---CUCGCU--UCGGag -5'
24360 3' -51.4 NC_005264.1 + 157647 0.68 0.963922
Target:  5'- uCGCGGCUuc-CGAAGuuucggccGCGAgGGCCUCc -3'
miRNA:   3'- -GCGCUGAuauGCUUCu-------CGCU-UCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.