miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 3' -51.4 NC_005264.1 + 4886 0.68 0.967238
Target:  5'- aGCGACac-GCGGAGuuCGAGGCCa- -3'
miRNA:   3'- gCGCUGauaUGCUUCucGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 156105 0.7 0.934064
Target:  5'- uGUGGCUGaGCGAAGAGUGGcccGCC-Ca -3'
miRNA:   3'- gCGCUGAUaUGCUUCUCGCUu--CGGaG- -5'
24360 3' -51.4 NC_005264.1 + 112595 0.7 0.934064
Target:  5'- cCGCGGCagGUGCacaaacuGGGAGCGggGCC-Cg -3'
miRNA:   3'- -GCGCUGa-UAUGc------UUCUCGCuuCGGaG- -5'
24360 3' -51.4 NC_005264.1 + 79446 0.69 0.948325
Target:  5'- cCGCGGCgcgcagACGAcGAGCGGcagcugGGCUUCu -3'
miRNA:   3'- -GCGCUGaua---UGCUuCUCGCU------UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 126291 0.69 0.952584
Target:  5'- gGuCGGCgccaggACGAAGAcgGCGggGCCUa -3'
miRNA:   3'- gC-GCUGaua---UGCUUCU--CGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 156590 0.69 0.952584
Target:  5'- gGCGACgaccgcgACGGAG-GCGGcaAGUCUCg -3'
miRNA:   3'- gCGCUGaua----UGCUUCuCGCU--UCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 121505 0.69 0.952584
Target:  5'- uCGCGGCUGcuucgACGAuggucGGCG-GGCCUCg -3'
miRNA:   3'- -GCGCUGAUa----UGCUuc---UCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 121538 0.69 0.9566
Target:  5'- gCGCGACUucagcGCGggGGGCGA--CUUCc -3'
miRNA:   3'- -GCGCUGAua---UGCuuCUCGCUucGGAG- -5'
24360 3' -51.4 NC_005264.1 + 91033 0.69 0.960377
Target:  5'- cCGCGuaUGUGCGAAcacGAGCGAgaAGCCg- -3'
miRNA:   3'- -GCGCugAUAUGCUU---CUCGCU--UCGGag -5'
24360 3' -51.4 NC_005264.1 + 3670 0.7 0.934064
Target:  5'- gGCGACUGgcauuGGuGCGggGCCUg -3'
miRNA:   3'- gCGCUGAUaugcuUCuCGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 4017 0.7 0.917536
Target:  5'- gGCuGACUGUagaGCGggG-GCaAGGCCUCg -3'
miRNA:   3'- gCG-CUGAUA---UGCuuCuCGcUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 84093 0.71 0.911522
Target:  5'- uCGCGGCUAUugacACGGAGAacaaCGAAGaCCUUa -3'
miRNA:   3'- -GCGCUGAUA----UGCUUCUc---GCUUC-GGAG- -5'
24360 3' -51.4 NC_005264.1 + 36491 0.78 0.568823
Target:  5'- gGCGGCguuuucGUGCGAAGcGCGcGGCCUCg -3'
miRNA:   3'- gCGCUGa-----UAUGCUUCuCGCuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 124342 0.75 0.703828
Target:  5'- gGCGACUggcgggaGUACGggGAGaCGAAGCggucgCUCg -3'
miRNA:   3'- gCGCUGA-------UAUGCuuCUC-GCUUCG-----GAG- -5'
24360 3' -51.4 NC_005264.1 + 150078 0.74 0.755367
Target:  5'- uGCGGCUGcguUGCGGAcggcaggcGAGCGA-GCCUCc -3'
miRNA:   3'- gCGCUGAU---AUGCUU--------CUCGCUuCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 658 0.74 0.755367
Target:  5'- gGCGACUAaGCGAuGAGCcugacgGGAGCCUg -3'
miRNA:   3'- gCGCUGAUaUGCUuCUCG------CUUCGGAg -5'
24360 3' -51.4 NC_005264.1 + 22837 0.74 0.774836
Target:  5'- aGCGAgacggGUACGGAcGGGCGAGGCCg- -3'
miRNA:   3'- gCGCUga---UAUGCUU-CUCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 40787 0.73 0.803002
Target:  5'- cCGCGGC---GCcGAGAGCGGAGCCg- -3'
miRNA:   3'- -GCGCUGauaUGcUUCUCGCUUCGGag -5'
24360 3' -51.4 NC_005264.1 + 149436 0.73 0.812076
Target:  5'- gCGCGcCgGUGCGGAGAGCugcggcggagGAGGUCUCg -3'
miRNA:   3'- -GCGCuGaUAUGCUUCUCG----------CUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 80246 0.71 0.891989
Target:  5'- uCGCGAUUGUcacgccuugAgGgcGAGCGAGGCCg- -3'
miRNA:   3'- -GCGCUGAUA---------UgCuuCUCGCUUCGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.