Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24360 | 5' | -52.6 | NC_005264.1 | + | 82417 | 0.68 | 0.944425 |
Target: 5'- -gGAGA----GCUG-GCGGggGCAGCa -3' miRNA: 3'- caUUCUgaagCGGCaCGCCuuCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 56699 | 0.68 | 0.944425 |
Target: 5'- gGUAAGGC-UCGCCGcGCGacAAGCuGCc -3' miRNA: 3'- -CAUUCUGaAGCGGCaCGCc-UUCGuCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 50563 | 0.68 | 0.943967 |
Target: 5'- --uAGGCg-CGCgCGUGCGGGAagcgcacGCGGCg -3' miRNA: 3'- cauUCUGaaGCG-GCACGCCUU-------CGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 98976 | 0.68 | 0.93973 |
Target: 5'- -gAAGACg--GCCGuUGUGGA-GCGGCc -3' miRNA: 3'- caUUCUGaagCGGC-ACGCCUuCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 127386 | 0.68 | 0.93973 |
Target: 5'- cGUcAGGCgaugguuaCGUgGUGCGGcAGGCAGCc -3' miRNA: 3'- -CAuUCUGaa------GCGgCACGCC-UUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 129554 | 0.68 | 0.93973 |
Target: 5'- --uAGGCgUCGCCGcGUGGucGUGGCa -3' miRNA: 3'- cauUCUGaAGCGGCaCGCCuuCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 79212 | 0.68 | 0.934786 |
Target: 5'- cUGGGGCUagGCugCGUGCaGGcGGCGGCg -3' miRNA: 3'- cAUUCUGAagCG--GCACG-CCuUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 136949 | 0.68 | 0.934786 |
Target: 5'- -gAAGGCgcagCGCCccacuGUGCGGAGucuGCAGUc -3' miRNA: 3'- caUUCUGaa--GCGG-----CACGCCUU---CGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 149428 | 0.69 | 0.929593 |
Target: 5'- ---cGGCggucgcgCGCCgGUGCGGAGagcuGCGGCg -3' miRNA: 3'- cauuCUGaa-----GCGG-CACGCCUU----CGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 30401 | 0.69 | 0.929593 |
Target: 5'- ---cGGCggucgcgCGCCgGUGCGGAGagcuGCGGCg -3' miRNA: 3'- cauuCUGaa-----GCGG-CACGCCUU----CGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 110750 | 0.69 | 0.929593 |
Target: 5'- --cGGcCUUCGCCGaaGCGGAGGUuuuguGCa -3' miRNA: 3'- cauUCuGAAGCGGCa-CGCCUUCGu----CG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 6442 | 0.69 | 0.924149 |
Target: 5'- ---cGGCgUCGCUG-GCGGAgaacuccucGGCGGCg -3' miRNA: 3'- cauuCUGaAGCGGCaCGCCU---------UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 125469 | 0.69 | 0.924149 |
Target: 5'- ---cGGCgUCGCUG-GCGGAgaacuccucGGCGGCg -3' miRNA: 3'- cauuCUGaAGCGGCaCGCCU---------UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 98415 | 0.69 | 0.918455 |
Target: 5'- cGgcAGACgucaUCGCCGUGCcc--GCGGCg -3' miRNA: 3'- -CauUCUGa---AGCGGCACGccuuCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 162712 | 0.69 | 0.917872 |
Target: 5'- uUAAGGCggcCGCCGgggaGCGGGaaaaggaaacucgAGCGGCc -3' miRNA: 3'- cAUUCUGaa-GCGGCa---CGCCU-------------UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 43686 | 0.69 | 0.917872 |
Target: 5'- uUAAGGCggcCGCCGgggaGCGGGaaaaggaaacucgAGCGGCc -3' miRNA: 3'- cAUUCUGaa-GCGGCa---CGCCU-------------UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 138077 | 0.69 | 0.917872 |
Target: 5'- -aGAGACa-CGCCGUGCuGGAuguacaaGGaCAGCa -3' miRNA: 3'- caUUCUGaaGCGGCACG-CCU-------UC-GUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 140196 | 0.69 | 0.90632 |
Target: 5'- cGUGGGcCUUUGCCGUGUucgaagucccucGGGccaagacuuGGCGGCg -3' miRNA: 3'- -CAUUCuGAAGCGGCACG------------CCU---------UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 29120 | 0.69 | 0.90632 |
Target: 5'- -aAGGGCU--GUCGUGCcaGAGGCAGCa -3' miRNA: 3'- caUUCUGAagCGGCACGc-CUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 100205 | 0.69 | 0.90632 |
Target: 5'- ---cGACUUCGCUGagcuccGCGGGGcGCAGUu -3' miRNA: 3'- cauuCUGAAGCGGCa-----CGCCUU-CGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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