miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 5' -52.6 NC_005264.1 + 116371 0.67 0.970617
Target:  5'- uGUAGGGCc-UGCCGUcGCGGGAGaccucuucguCGGCu -3'
miRNA:   3'- -CAUUCUGaaGCGGCA-CGCCUUC----------GUCG- -5'
24360 5' -52.6 NC_005264.1 + 18547 0.67 0.967559
Target:  5'- -gAGGGCg-CGCCG-GCGucagucGGAGCGGCa -3'
miRNA:   3'- caUUCUGaaGCGGCaCGC------CUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 118610 0.67 0.967559
Target:  5'- ---cGACUUCGCCGcGCuugaagGGGAaCAGCu -3'
miRNA:   3'- cauuCUGAAGCGGCaCG------CCUUcGUCG- -5'
24360 5' -52.6 NC_005264.1 + 16567 0.67 0.967559
Target:  5'- --uGGGCggCGCCGggGCGGcGGC-GCa -3'
miRNA:   3'- cauUCUGaaGCGGCa-CGCCuUCGuCG- -5'
24360 5' -52.6 NC_005264.1 + 55129 0.67 0.967241
Target:  5'- gGUucGACacccCGCCGUGCGcugugcuGgcGCAGCg -3'
miRNA:   3'- -CAuuCUGaa--GCGGCACGC-------CuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 138663 0.67 0.964283
Target:  5'- --cAGACUUUaCCGaccGCGGccGCAGCa -3'
miRNA:   3'- cauUCUGAAGcGGCa--CGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 123288 0.67 0.964283
Target:  5'- ---cGGCUU-GCCGcGCGGGaaccgcggGGCGGCg -3'
miRNA:   3'- cauuCUGAAgCGGCaCGCCU--------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 120287 0.67 0.964283
Target:  5'- -cAAGGCUgccggCGCgaagaCGcGCGGAAGCuGCg -3'
miRNA:   3'- caUUCUGAa----GCG-----GCaCGCCUUCGuCG- -5'
24360 5' -52.6 NC_005264.1 + 21256 0.67 0.964283
Target:  5'- -cGAGugUgcgCGCC--GCGGAGGUGGUa -3'
miRNA:   3'- caUUCugAa--GCGGcaCGCCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 92692 0.67 0.964283
Target:  5'- aGUGAGGCgcCGCC--GCGGcAGCAaGCa -3'
miRNA:   3'- -CAUUCUGaaGCGGcaCGCCuUCGU-CG- -5'
24360 5' -52.6 NC_005264.1 + 4261 0.67 0.964283
Target:  5'- ---cGGCUU-GCCGcGCGGGaaccgcggGGCGGCg -3'
miRNA:   3'- cauuCUGAAgCGGCaCGCCU--------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 45130 0.67 0.963256
Target:  5'- cGUGGGGCgaagaaccagacaggCGCCacgacGCGGAGGCAGg -3'
miRNA:   3'- -CAUUCUGaa-------------GCGGca---CGCCUUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 30838 0.67 0.957049
Target:  5'- --cGGGCUcgcgUCGUCGU-CGGcGGCGGCg -3'
miRNA:   3'- cauUCUGA----AGCGGCAcGCCuUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 153326 0.67 0.957049
Target:  5'- aGUGAGGCcagugUUCG-UGUGCuccuucacgggGGAGGCGGCa -3'
miRNA:   3'- -CAUUCUG-----AAGCgGCACG-----------CCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 33236 0.67 0.957049
Target:  5'- -cGAGaaGCUUCGCCGccGCGcc-GCAGCg -3'
miRNA:   3'- caUUC--UGAAGCGGCa-CGCcuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 149864 0.67 0.957049
Target:  5'- --cGGGCUcgcgUCGUCGU-CGGcGGCGGCg -3'
miRNA:   3'- cauUCUGA----AGCGGCAcGCCuUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 108068 0.68 0.954697
Target:  5'- --cGGugUUcuggaugcgcaaccaCGCCGUGCGGAucgaaAGCAaGCu -3'
miRNA:   3'- cauUCugAA---------------GCGGCACGCCU-----UCGU-CG- -5'
24360 5' -52.6 NC_005264.1 + 92997 0.68 0.953082
Target:  5'- --cAGcACgcgGCCGUaGCGGggGCAGUc -3'
miRNA:   3'- cauUC-UGaagCGGCA-CGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 157683 0.68 0.948875
Target:  5'- -aAAGGCUUCGgaCGaUGCGGc-GCGGCc -3'
miRNA:   3'- caUUCUGAAGCg-GC-ACGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 73317 0.68 0.948875
Target:  5'- -cAAGGCagagCGCCGUGauauacuGGAGCGGCu -3'
miRNA:   3'- caUUCUGaa--GCGGCACgc-----CUUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.