miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 5' -52.6 NC_005264.1 + 36243 0.7 0.871743
Target:  5'- -aGGGGCggaGCCGcacgugGCGGAAGCGGg -3'
miRNA:   3'- caUUCUGaagCGGCa-----CGCCUUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 37562 0.66 0.980798
Target:  5'- ---cGGCgaCGaCCGcGaCGGAGGCGGCa -3'
miRNA:   3'- cauuCUGaaGC-GGCaC-GCCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 41495 0.76 0.590103
Target:  5'- cGUAAaGC-UCGCCaacuccuccuuaagGUGCGGGAGCAGCc -3'
miRNA:   3'- -CAUUcUGaAGCGG--------------CACGCCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 43686 0.69 0.917872
Target:  5'- uUAAGGCggcCGCCGgggaGCGGGaaaaggaaacucgAGCGGCc -3'
miRNA:   3'- cAUUCUGaa-GCGGCa---CGCCU-------------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 43781 0.75 0.655975
Target:  5'- -gGAGAC-UCGCCGUggguGCGGGGcGCAGUu -3'
miRNA:   3'- caUUCUGaAGCGGCA----CGCCUU-CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 45130 0.67 0.963256
Target:  5'- cGUGGGGCgaagaaccagacaggCGCCacgacGCGGAGGCAGg -3'
miRNA:   3'- -CAUUCUGaa-------------GCGGca---CGCCUUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 46576 0.7 0.870992
Target:  5'- ---cGGCUuccaagUCGCgCGUGCGGAGGCucugucccugcggGGCg -3'
miRNA:   3'- cauuCUGA------AGCG-GCACGCCUUCG-------------UCG- -5'
24360 5' -52.6 NC_005264.1 + 50446 0.66 0.980798
Target:  5'- --uGGuCUUCGCCGUGCuucuugaaGAAGguGUc -3'
miRNA:   3'- cauUCuGAAGCGGCACGc-------CUUCguCG- -5'
24360 5' -52.6 NC_005264.1 + 50563 0.68 0.943967
Target:  5'- --uAGGCg-CGCgCGUGCGGGAagcgcacGCGGCg -3'
miRNA:   3'- cauUCUGaaGCG-GCACGCCUU-------CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 52448 0.66 0.98287
Target:  5'- -cGAGcCUgccgaCGCCGUGCGcGuAGCAGa -3'
miRNA:   3'- caUUCuGAa----GCGGCACGC-CuUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 54209 0.72 0.814121
Target:  5'- aGUGGGACcUCGCCaauagaggccuGUGUcGAGGCGGCc -3'
miRNA:   3'- -CAUUCUGaAGCGG-----------CACGcCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 55129 0.67 0.967241
Target:  5'- gGUucGACacccCGCCGUGCGcugugcuGgcGCAGCg -3'
miRNA:   3'- -CAuuCUGaa--GCGGCACGC-------CuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 56699 0.68 0.944425
Target:  5'- gGUAAGGC-UCGCCGcGCGacAAGCuGCc -3'
miRNA:   3'- -CAUUCUGaAGCGGCaCGCc-UUCGuCG- -5'
24360 5' -52.6 NC_005264.1 + 56801 0.72 0.777218
Target:  5'- -gGAGGCgcaUCGCCgGUGuCGGucGGCGGCg -3'
miRNA:   3'- caUUCUGa--AGCGG-CAC-GCCu-UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 60000 0.66 0.98287
Target:  5'- -cGAGACg--GCCGcGUGGccGCGGCc -3'
miRNA:   3'- caUUCUGaagCGGCaCGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 72459 0.67 0.970617
Target:  5'- cGgcGGGCgcCGCCG-GuCGGAucguguaccGGCAGCg -3'
miRNA:   3'- -CauUCUGaaGCGGCaC-GCCU---------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 73045 0.66 0.980798
Target:  5'- --cGGAaagCGCCG-GCGGuauGCGGCc -3'
miRNA:   3'- cauUCUgaaGCGGCaCGCCuu-CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 73317 0.68 0.948875
Target:  5'- -cAAGGCagagCGCCGUGauauacuGGAGCGGCu -3'
miRNA:   3'- caUUCUGaa--GCGGCACgc-----CUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 79212 0.68 0.934786
Target:  5'- cUGGGGCUagGCugCGUGCaGGcGGCGGCg -3'
miRNA:   3'- cAUUCUGAagCG--GCACG-CCuUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 79985 0.66 0.976103
Target:  5'- -aGAGACcgaUGCCGgccgcGCGGAAGaggaGGCg -3'
miRNA:   3'- caUUCUGaa-GCGGCa----CGCCUUCg---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.