Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24360 | 5' | -52.6 | NC_005264.1 | + | 116371 | 0.67 | 0.970617 |
Target: 5'- uGUAGGGCc-UGCCGUcGCGGGAGaccucuucguCGGCu -3' miRNA: 3'- -CAUUCUGaaGCGGCA-CGCCUUC----------GUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 118610 | 0.67 | 0.967559 |
Target: 5'- ---cGACUUCGCCGcGCuugaagGGGAaCAGCu -3' miRNA: 3'- cauuCUGAAGCGGCaCG------CCUUcGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 16567 | 0.67 | 0.967559 |
Target: 5'- --uGGGCggCGCCGggGCGGcGGC-GCa -3' miRNA: 3'- cauUCUGaaGCGGCa-CGCCuUCGuCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 55129 | 0.67 | 0.967241 |
Target: 5'- gGUucGACacccCGCCGUGCGcugugcuGgcGCAGCg -3' miRNA: 3'- -CAuuCUGaa--GCGGCACGC-------CuuCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 123288 | 0.67 | 0.964283 |
Target: 5'- ---cGGCUU-GCCGcGCGGGaaccgcggGGCGGCg -3' miRNA: 3'- cauuCUGAAgCGGCaCGCCU--------UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 72459 | 0.67 | 0.970617 |
Target: 5'- cGgcGGGCgcCGCCG-GuCGGAucguguaccGGCAGCg -3' miRNA: 3'- -CauUCUGaaGCGGCaC-GCCU---------UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 138663 | 0.67 | 0.964283 |
Target: 5'- --cAGACUUUaCCGaccGCGGccGCAGCa -3' miRNA: 3'- cauUCUGAAGcGGCa--CGCCuuCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 120287 | 0.67 | 0.964283 |
Target: 5'- -cAAGGCUgccggCGCgaagaCGcGCGGAAGCuGCg -3' miRNA: 3'- caUUCUGAa----GCG-----GCaCGCCUUCGuCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 4261 | 0.67 | 0.964283 |
Target: 5'- ---cGGCUU-GCCGcGCGGGaaccgcggGGCGGCg -3' miRNA: 3'- cauuCUGAAgCGGCaCGCCU--------UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 45130 | 0.67 | 0.963256 |
Target: 5'- cGUGGGGCgaagaaccagacaggCGCCacgacGCGGAGGCAGg -3' miRNA: 3'- -CAUUCUGaa-------------GCGGca---CGCCUUCGUCg -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 30838 | 0.67 | 0.957049 |
Target: 5'- --cGGGCUcgcgUCGUCGU-CGGcGGCGGCg -3' miRNA: 3'- cauUCUGA----AGCGGCAcGCCuUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 153326 | 0.67 | 0.957049 |
Target: 5'- aGUGAGGCcagugUUCG-UGUGCuccuucacgggGGAGGCGGCa -3' miRNA: 3'- -CAUUCUG-----AAGCgGCACG-----------CCUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 18547 | 0.67 | 0.967559 |
Target: 5'- -gAGGGCg-CGCCG-GCGucagucGGAGCGGCa -3' miRNA: 3'- caUUCUGaaGCGGCaCGC------CUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 33236 | 0.67 | 0.957049 |
Target: 5'- -cGAGaaGCUUCGCCGccGCGcc-GCAGCg -3' miRNA: 3'- caUUC--UGAAGCGGCa-CGCcuuCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 149864 | 0.67 | 0.957049 |
Target: 5'- --cGGGCUcgcgUCGUCGU-CGGcGGCGGCg -3' miRNA: 3'- cauUCUGA----AGCGGCAcGCCuUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 92692 | 0.67 | 0.964283 |
Target: 5'- aGUGAGGCgcCGCC--GCGGcAGCAaGCa -3' miRNA: 3'- -CAUUCUGaaGCGGcaCGCCuUCGU-CG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 79212 | 0.68 | 0.934786 |
Target: 5'- cUGGGGCUagGCugCGUGCaGGcGGCGGCg -3' miRNA: 3'- cAUUCUGAagCG--GCACG-CCuUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 50563 | 0.68 | 0.943967 |
Target: 5'- --uAGGCg-CGCgCGUGCGGGAagcgcacGCGGCg -3' miRNA: 3'- cauUCUGaaGCG-GCACGCCUU-------CGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 73317 | 0.68 | 0.948875 |
Target: 5'- -cAAGGCagagCGCCGUGauauacuGGAGCGGCu -3' miRNA: 3'- caUUCUGaa--GCGGCACgc-----CUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 92997 | 0.68 | 0.953082 |
Target: 5'- --cAGcACgcgGCCGUaGCGGggGCAGUc -3' miRNA: 3'- cauUC-UGaagCGGCA-CGCCuuCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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