miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 5' -52.6 NC_005264.1 + 124293 0.7 0.893203
Target:  5'- -gGAGGCgagUCgcgGCCGgacgGCGGGgcGGCGGCu -3'
miRNA:   3'- caUUCUGa--AG---CGGCa---CGCCU--UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 149338 0.7 0.893203
Target:  5'- -----cCUUCGCCGUcGCGGAAGUcgaccucucccgAGCu -3'
miRNA:   3'- cauucuGAAGCGGCA-CGCCUUCG------------UCG- -5'
24360 5' -52.6 NC_005264.1 + 82165 0.7 0.893203
Target:  5'- ---uGACUcaaacUGCCGUGCGGccggucGGCGGCg -3'
miRNA:   3'- cauuCUGAa----GCGGCACGCCu-----UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 140196 0.69 0.90632
Target:  5'- cGUGGGcCUUUGCCGUGUucgaagucccucGGGccaagacuuGGCGGCg -3'
miRNA:   3'- -CAUUCuGAAGCGGCACG------------CCU---------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 29120 0.69 0.90632
Target:  5'- -aAGGGCU--GUCGUGCcaGAGGCAGCa -3'
miRNA:   3'- caUUCUGAagCGGCACGc-CUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 100205 0.69 0.90632
Target:  5'- ---cGACUUCGCUGagcuccGCGGGGcGCAGUu -3'
miRNA:   3'- cauuCUGAAGCGGCa-----CGCCUU-CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 138077 0.69 0.917872
Target:  5'- -aGAGACa-CGCCGUGCuGGAuguacaaGGaCAGCa -3'
miRNA:   3'- caUUCUGaaGCGGCACG-CCU-------UC-GUCG- -5'
24360 5' -52.6 NC_005264.1 + 162712 0.69 0.917872
Target:  5'- uUAAGGCggcCGCCGgggaGCGGGaaaaggaaacucgAGCGGCc -3'
miRNA:   3'- cAUUCUGaa-GCGGCa---CGCCU-------------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 43686 0.69 0.917872
Target:  5'- uUAAGGCggcCGCCGgggaGCGGGaaaaggaaacucgAGCGGCc -3'
miRNA:   3'- cAUUCUGaa-GCGGCa---CGCCU-------------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 98415 0.69 0.918455
Target:  5'- cGgcAGACgucaUCGCCGUGCcc--GCGGCg -3'
miRNA:   3'- -CauUCUGa---AGCGGCACGccuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 6442 0.69 0.924149
Target:  5'- ---cGGCgUCGCUG-GCGGAgaacuccucGGCGGCg -3'
miRNA:   3'- cauuCUGaAGCGGCaCGCCU---------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 125469 0.69 0.924149
Target:  5'- ---cGGCgUCGCUG-GCGGAgaacuccucGGCGGCg -3'
miRNA:   3'- cauuCUGaAGCGGCaCGCCU---------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 30401 0.69 0.929593
Target:  5'- ---cGGCggucgcgCGCCgGUGCGGAGagcuGCGGCg -3'
miRNA:   3'- cauuCUGaa-----GCGG-CACGCCUU----CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 110750 0.69 0.929593
Target:  5'- --cGGcCUUCGCCGaaGCGGAGGUuuuguGCa -3'
miRNA:   3'- cauUCuGAAGCGGCa-CGCCUUCGu----CG- -5'
24360 5' -52.6 NC_005264.1 + 149428 0.69 0.929593
Target:  5'- ---cGGCggucgcgCGCCgGUGCGGAGagcuGCGGCg -3'
miRNA:   3'- cauuCUGaa-----GCGG-CACGCCUU----CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 136949 0.68 0.934786
Target:  5'- -gAAGGCgcagCGCCccacuGUGCGGAGucuGCAGUc -3'
miRNA:   3'- caUUCUGaa--GCGG-----CACGCCUU---CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 79212 0.68 0.934786
Target:  5'- cUGGGGCUagGCugCGUGCaGGcGGCGGCg -3'
miRNA:   3'- cAUUCUGAagCG--GCACG-CCuUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 129554 0.68 0.93973
Target:  5'- --uAGGCgUCGCCGcGUGGucGUGGCa -3'
miRNA:   3'- cauUCUGaAGCGGCaCGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 98976 0.68 0.93973
Target:  5'- -gAAGACg--GCCGuUGUGGA-GCGGCc -3'
miRNA:   3'- caUUCUGaagCGGC-ACGCCUuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 127386 0.68 0.93973
Target:  5'- cGUcAGGCgaugguuaCGUgGUGCGGcAGGCAGCc -3'
miRNA:   3'- -CAuUCUGaa------GCGgCACGCC-UUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.