miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 5' -52.6 NC_005264.1 + 137990 1.13 0.003587
Target:  5'- gGUAAGACUUCGCCGUGCGGAAGCAGCg -3'
miRNA:   3'- -CAUUCUGAAGCGGCACGCCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 41495 0.76 0.590103
Target:  5'- cGUAAaGC-UCGCCaacuccuccuuaagGUGCGGGAGCAGCc -3'
miRNA:   3'- -CAUUcUGaAGCGG--------------CACGCCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 43781 0.75 0.655975
Target:  5'- -gGAGAC-UCGCCGUggguGCGGGGcGCAGUu -3'
miRNA:   3'- caUUCUGaAGCGGCA----CGCCUU-CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 162807 0.75 0.655975
Target:  5'- -gGAGAC-UCGCCGUggguGCGGGGcGCAGUu -3'
miRNA:   3'- caUUCUGaAGCGGCA----CGCCUU-CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 124453 0.73 0.727098
Target:  5'- -cGAGAUcUUGUCuuucgagagcgagGUGCGGAAGCGGCg -3'
miRNA:   3'- caUUCUGaAGCGG-------------CACGCCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 89963 0.73 0.767628
Target:  5'- --cAGGCaa-GCCGUGUGGAAGCcuuGCa -3'
miRNA:   3'- cauUCUGaagCGGCACGCCUUCGu--CG- -5'
24360 5' -52.6 NC_005264.1 + 19940 0.73 0.767628
Target:  5'- -gAGGACgcaucgUCGCCGUGaUGGAGaaaggcGCGGCg -3'
miRNA:   3'- caUUCUGa-----AGCGGCAC-GCCUU------CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 56801 0.72 0.777218
Target:  5'- -gGAGGCgcaUCGCCgGUGuCGGucGGCGGCg -3'
miRNA:   3'- caUUCUGa--AGCGG-CAC-GCCu-UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 54209 0.72 0.814121
Target:  5'- aGUGGGACcUCGCCaauagaggccuGUGUcGAGGCGGCc -3'
miRNA:   3'- -CAUUCUGaAGCGG-----------CACGcCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 20449 0.72 0.814121
Target:  5'- --uGGGCguaGCCG-GCGGAcAGCGGCg -3'
miRNA:   3'- cauUCUGaagCGGCaCGCCU-UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 96627 0.71 0.840016
Target:  5'- -cAAGucCUUCGCUGgccGCGGAGGC-GCa -3'
miRNA:   3'- caUUCu-GAAGCGGCa--CGCCUUCGuCG- -5'
24360 5' -52.6 NC_005264.1 + 27436 0.7 0.86336
Target:  5'- aUGAGGCUUucagccagaccugCGCCGaGCGGc-GCAGCa -3'
miRNA:   3'- cAUUCUGAA-------------GCGGCaCGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 10400 0.7 0.864133
Target:  5'- -gGAGGgaUCGUCGaGCGGGaucguGGCAGCa -3'
miRNA:   3'- caUUCUgaAGCGGCaCGCCU-----UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 129427 0.7 0.864133
Target:  5'- -gGAGGgaUCGUCGaGCGGGaucguGGCAGCa -3'
miRNA:   3'- caUUCUgaAGCGGCaCGCCU-----UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 46576 0.7 0.870992
Target:  5'- ---cGGCUuccaagUCGCgCGUGCGGAGGCucugucccugcggGGCg -3'
miRNA:   3'- cauuCUGA------AGCG-GCACGCCUUCG-------------UCG- -5'
24360 5' -52.6 NC_005264.1 + 155270 0.7 0.871743
Target:  5'- -aGGGGCggaGCCGcacgugGCGGAAGCGGg -3'
miRNA:   3'- caUUCUGaagCGGCa-----CGCCUUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 36243 0.7 0.871743
Target:  5'- -aGGGGCggaGCCGcacgugGCGGAAGCGGg -3'
miRNA:   3'- caUUCUGaagCGGCa-----CGCCUUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 95456 0.7 0.886283
Target:  5'- ----cGCUaccgCGCCG-GCGGgcGCAGCg -3'
miRNA:   3'- cauucUGAa---GCGGCaCGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 82165 0.7 0.893203
Target:  5'- ---uGACUcaaacUGCCGUGCGGccggucGGCGGCg -3'
miRNA:   3'- cauuCUGAa----GCGGCACGCCu-----UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 149338 0.7 0.893203
Target:  5'- -----cCUUCGCCGUcGCGGAAGUcgaccucucccgAGCu -3'
miRNA:   3'- cauucuGAAGCGGCA-CGCCUUCG------------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.