miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 5' -52.6 NC_005264.1 + 33236 0.67 0.957049
Target:  5'- -cGAGaaGCUUCGCCGccGCGcc-GCAGCg -3'
miRNA:   3'- caUUC--UGAAGCGGCa-CGCcuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 125469 0.69 0.924149
Target:  5'- ---cGGCgUCGCUG-GCGGAgaacuccucGGCGGCg -3'
miRNA:   3'- cauuCUGaAGCGGCaCGCCU---------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 110750 0.69 0.929593
Target:  5'- --cGGcCUUCGCCGaaGCGGAGGUuuuguGCa -3'
miRNA:   3'- cauUCuGAAGCGGCa-CGCCUUCGu----CG- -5'
24360 5' -52.6 NC_005264.1 + 149428 0.69 0.929593
Target:  5'- ---cGGCggucgcgCGCCgGUGCGGAGagcuGCGGCg -3'
miRNA:   3'- cauuCUGaa-----GCGG-CACGCCUU----CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 136949 0.68 0.934786
Target:  5'- -gAAGGCgcagCGCCccacuGUGCGGAGucuGCAGUc -3'
miRNA:   3'- caUUCUGaa--GCGG-----CACGCCUU---CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 79212 0.68 0.934786
Target:  5'- cUGGGGCUagGCugCGUGCaGGcGGCGGCg -3'
miRNA:   3'- cAUUCUGAagCG--GCACG-CCuUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 50563 0.68 0.943967
Target:  5'- --uAGGCg-CGCgCGUGCGGGAagcgcacGCGGCg -3'
miRNA:   3'- cauUCUGaaGCG-GCACGCCUU-------CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 73317 0.68 0.948875
Target:  5'- -cAAGGCagagCGCCGUGauauacuGGAGCGGCu -3'
miRNA:   3'- caUUCUGaa--GCGGCACgc-----CUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 92997 0.68 0.953082
Target:  5'- --cAGcACgcgGCCGUaGCGGggGCAGUc -3'
miRNA:   3'- cauUC-UGaagCGGCA-CGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 162712 0.69 0.917872
Target:  5'- uUAAGGCggcCGCCGgggaGCGGGaaaaggaaacucgAGCGGCc -3'
miRNA:   3'- cAUUCUGaa-GCGGCa---CGCCU-------------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 124293 0.7 0.893203
Target:  5'- -gGAGGCgagUCgcgGCCGgacgGCGGGgcGGCGGCu -3'
miRNA:   3'- caUUCUGa--AG---CGGCa---CGCCU--UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 149338 0.7 0.893203
Target:  5'- -----cCUUCGCCGUcGCGGAAGUcgaccucucccgAGCu -3'
miRNA:   3'- cauucuGAAGCGGCA-CGCCUUCG------------UCG- -5'
24360 5' -52.6 NC_005264.1 + 162807 0.75 0.655975
Target:  5'- -gGAGAC-UCGCCGUggguGCGGGGcGCAGUu -3'
miRNA:   3'- caUUCUGaAGCGGCA----CGCCUU-CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 19940 0.73 0.767628
Target:  5'- -gAGGACgcaucgUCGCCGUGaUGGAGaaaggcGCGGCg -3'
miRNA:   3'- caUUCUGa-----AGCGGCAC-GCCUU------CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 56801 0.72 0.777218
Target:  5'- -gGAGGCgcaUCGCCgGUGuCGGucGGCGGCg -3'
miRNA:   3'- caUUCUGa--AGCGG-CAC-GCCu-UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 20449 0.72 0.814121
Target:  5'- --uGGGCguaGCCG-GCGGAcAGCGGCg -3'
miRNA:   3'- cauUCUGaagCGGCaCGCCU-UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 27436 0.7 0.86336
Target:  5'- aUGAGGCUUucagccagaccugCGCCGaGCGGc-GCAGCa -3'
miRNA:   3'- cAUUCUGAA-------------GCGGCaCGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 129427 0.7 0.864133
Target:  5'- -gGAGGgaUCGUCGaGCGGGaucguGGCAGCa -3'
miRNA:   3'- caUUCUgaAGCGGCaCGCCU-----UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 46576 0.7 0.870992
Target:  5'- ---cGGCUuccaagUCGCgCGUGCGGAGGCucugucccugcggGGCg -3'
miRNA:   3'- cauuCUGA------AGCG-GCACGCCUUCG-------------UCG- -5'
24360 5' -52.6 NC_005264.1 + 155270 0.7 0.871743
Target:  5'- -aGGGGCggaGCCGcacgugGCGGAAGCGGg -3'
miRNA:   3'- caUUCUGaagCGGCa-----CGCCUUCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.