Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24360 | 5' | -52.6 | NC_005264.1 | + | 52448 | 0.66 | 0.98287 |
Target: 5'- -cGAGcCUgccgaCGCCGUGCGcGuAGCAGa -3' miRNA: 3'- caUUCuGAa----GCGGCACGC-CuUCGUCg -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 4261 | 0.67 | 0.964283 |
Target: 5'- ---cGGCUU-GCCGcGCGGGaaccgcggGGCGGCg -3' miRNA: 3'- cauuCUGAAgCGGCaCGCCU--------UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 30838 | 0.67 | 0.957049 |
Target: 5'- --cGGGCUcgcgUCGUCGU-CGGcGGCGGCg -3' miRNA: 3'- cauUCUGA----AGCGGCAcGCCuUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 137990 | 1.13 | 0.003587 |
Target: 5'- gGUAAGACUUCGCCGUGCGGAAGCAGCg -3' miRNA: 3'- -CAUUCUGAAGCGGCACGCCUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 96232 | 0.66 | 0.980798 |
Target: 5'- ---cGACggCGCCGgcaacGCGGc-GCAGCc -3' miRNA: 3'- cauuCUGaaGCGGCa----CGCCuuCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 73045 | 0.66 | 0.980798 |
Target: 5'- --cGGAaagCGCCG-GCGGuauGCGGCc -3' miRNA: 3'- cauUCUgaaGCGGCaCGCCuu-CGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 24379 | 0.66 | 0.97831 |
Target: 5'- ---cGGCUUCGCgGcucccccgGCGGcgagguagaucgcGAGCAGCg -3' miRNA: 3'- cauuCUGAAGCGgCa-------CGCC-------------UUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 79985 | 0.66 | 0.976103 |
Target: 5'- -aGAGACcgaUGCCGgccgcGCGGAAGaggaGGCg -3' miRNA: 3'- caUUCUGaa-GCGGCa----CGCCUUCg---UCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 116275 | 0.66 | 0.973462 |
Target: 5'- ---cGACUUggaaGCCGUgGCGcGGGCGGCu -3' miRNA: 3'- cauuCUGAAg---CGGCA-CGCcUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 92692 | 0.67 | 0.964283 |
Target: 5'- aGUGAGGCgcCGCC--GCGGcAGCAaGCa -3' miRNA: 3'- -CAUUCUGaaGCGGcaCGCCuUCGU-CG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 138663 | 0.67 | 0.964283 |
Target: 5'- --cAGACUUUaCCGaccGCGGccGCAGCa -3' miRNA: 3'- cauUCUGAAGcGGCa--CGCCuuCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 123251 | 0.66 | 0.973462 |
Target: 5'- ----aGCUcCGuCUG-GCGGggGCAGCa -3' miRNA: 3'- cauucUGAaGC-GGCaCGCCuuCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 13315 | 0.66 | 0.98287 |
Target: 5'- -gAGGACg--GCCGcGCGG-AGCAGg -3' miRNA: 3'- caUUCUGaagCGGCaCGCCuUCGUCg -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 120287 | 0.67 | 0.964283 |
Target: 5'- -cAAGGCUgccggCGCgaagaCGcGCGGAAGCuGCg -3' miRNA: 3'- caUUCUGAa----GCG-----GCaCGCCUUCGuCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 145968 | 0.66 | 0.98267 |
Target: 5'- ---cGAcCUUCGCCG-GCGcGAauacgaacugcgcGGCGGCu -3' miRNA: 3'- cauuCU-GAAGCGGCaCGC-CU-------------UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 18581 | 0.66 | 0.976103 |
Target: 5'- -gGAGaACUcggUGUCgGUGCGGuAGCAGCc -3' miRNA: 3'- caUUC-UGAa--GCGG-CACGCCuUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 21256 | 0.67 | 0.964283 |
Target: 5'- -cGAGugUgcgCGCC--GCGGAGGUGGUa -3' miRNA: 3'- caUUCugAa--GCGGcaCGCCUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 45130 | 0.67 | 0.963256 |
Target: 5'- cGUGGGGCgaagaaccagacaggCGCCacgacGCGGAGGCAGg -3' miRNA: 3'- -CAUUCUGaa-------------GCGGca---CGCCUUCGUCg -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 37562 | 0.66 | 0.980798 |
Target: 5'- ---cGGCgaCGaCCGcGaCGGAGGCGGCa -3' miRNA: 3'- cauuCUGaaGC-GGCaC-GCCUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 50446 | 0.66 | 0.980798 |
Target: 5'- --uGGuCUUCGCCGUGCuucuugaaGAAGguGUc -3' miRNA: 3'- cauUCuGAAGCGGCACGc-------CUUCguCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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