miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 5' -52.6 NC_005264.1 + 4261 0.67 0.964283
Target:  5'- ---cGGCUU-GCCGcGCGGGaaccgcggGGCGGCg -3'
miRNA:   3'- cauuCUGAAgCGGCaCGCCU--------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 5266 0.7 0.893203
Target:  5'- -gGAGGCgagUCgcgGCCGgacgGCGGGgcGGCGGCu -3'
miRNA:   3'- caUUCUGa--AG---CGGCa---CGCCU--UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 6442 0.69 0.924149
Target:  5'- ---cGGCgUCGCUG-GCGGAgaacuccucGGCGGCg -3'
miRNA:   3'- cauuCUGaAGCGGCaCGCCU---------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 10400 0.7 0.864133
Target:  5'- -gGAGGgaUCGUCGaGCGGGaucguGGCAGCa -3'
miRNA:   3'- caUUCUgaAGCGGCaCGCCU-----UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 10977 0.66 0.980363
Target:  5'- -cGAGACgccccccacgugUCGCCGc-CGGAgcGGCGGCc -3'
miRNA:   3'- caUUCUGa-----------AGCGGCacGCCU--UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 13315 0.66 0.98287
Target:  5'- -gAGGACg--GCCGcGCGG-AGCAGg -3'
miRNA:   3'- caUUCUGaagCGGCaCGCCuUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 16567 0.67 0.967559
Target:  5'- --uGGGCggCGCCGggGCGGcGGC-GCa -3'
miRNA:   3'- cauUCUGaaGCGGCa-CGCCuUCGuCG- -5'
24360 5' -52.6 NC_005264.1 + 18128 0.66 0.980798
Target:  5'- -aGAGACgugcUUGCUGUcugGCGcGAGCGGCu -3'
miRNA:   3'- caUUCUGa---AGCGGCA---CGCcUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 18547 0.67 0.967559
Target:  5'- -gAGGGCg-CGCCG-GCGucagucGGAGCGGCa -3'
miRNA:   3'- caUUCUGaaGCGGCaCGC------CUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 18581 0.66 0.976103
Target:  5'- -gGAGaACUcggUGUCgGUGCGGuAGCAGCc -3'
miRNA:   3'- caUUC-UGAa--GCGG-CACGCCuUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 19940 0.73 0.767628
Target:  5'- -gAGGACgcaucgUCGCCGUGaUGGAGaaaggcGCGGCg -3'
miRNA:   3'- caUUCUGa-----AGCGGCAC-GCCUU------CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 20449 0.72 0.814121
Target:  5'- --uGGGCguaGCCG-GCGGAcAGCGGCg -3'
miRNA:   3'- cauUCUGaagCGGCaCGCCU-UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 21256 0.67 0.964283
Target:  5'- -cGAGugUgcgCGCC--GCGGAGGUGGUa -3'
miRNA:   3'- caUUCugAa--GCGGcaCGCCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 24379 0.66 0.97831
Target:  5'- ---cGGCUUCGCgGcucccccgGCGGcgagguagaucgcGAGCAGCg -3'
miRNA:   3'- cauuCUGAAGCGgCa-------CGCC-------------UUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 27436 0.7 0.86336
Target:  5'- aUGAGGCUUucagccagaccugCGCCGaGCGGc-GCAGCa -3'
miRNA:   3'- cAUUCUGAA-------------GCGGCaCGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 29120 0.69 0.90632
Target:  5'- -aAGGGCU--GUCGUGCcaGAGGCAGCa -3'
miRNA:   3'- caUUCUGAagCGGCACGc-CUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 30311 0.7 0.893203
Target:  5'- -----cCUUCGCCGUcGCGGAAGUcgaccucucccgAGCu -3'
miRNA:   3'- cauucuGAAGCGGCA-CGCCUUCG------------UCG- -5'
24360 5' -52.6 NC_005264.1 + 30401 0.69 0.929593
Target:  5'- ---cGGCggucgcgCGCCgGUGCGGAGagcuGCGGCg -3'
miRNA:   3'- cauuCUGaa-----GCGG-CACGCCUU----CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 30838 0.67 0.957049
Target:  5'- --cGGGCUcgcgUCGUCGU-CGGcGGCGGCg -3'
miRNA:   3'- cauUCUGA----AGCGGCAcGCCuUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 33236 0.67 0.957049
Target:  5'- -cGAGaaGCUUCGCCGccGCGcc-GCAGCg -3'
miRNA:   3'- caUUC--UGAAGCGGCa-CGCcuuCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.