miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 5' -52.6 NC_005264.1 + 162807 0.75 0.655975
Target:  5'- -gGAGAC-UCGCCGUggguGCGGGGcGCAGUu -3'
miRNA:   3'- caUUCUGaAGCGGCA----CGCCUU-CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 162712 0.69 0.917872
Target:  5'- uUAAGGCggcCGCCGgggaGCGGGaaaaggaaacucgAGCGGCc -3'
miRNA:   3'- cAUUCUGaa-GCGGCa---CGCCU-------------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 157683 0.68 0.948875
Target:  5'- -aAAGGCUUCGgaCGaUGCGGc-GCGGCc -3'
miRNA:   3'- caUUCUGAAGCg-GC-ACGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 156589 0.66 0.980798
Target:  5'- ---cGGCgaCGaCCGcGaCGGAGGCGGCa -3'
miRNA:   3'- cauuCUGaaGC-GGCaC-GCCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 155270 0.7 0.871743
Target:  5'- -aGGGGCggaGCCGcacgugGCGGAAGCGGg -3'
miRNA:   3'- caUUCUGaagCGGCa-----CGCCUUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 153326 0.67 0.957049
Target:  5'- aGUGAGGCcagugUUCG-UGUGCuccuucacgggGGAGGCGGCa -3'
miRNA:   3'- -CAUUCUG-----AAGCgGCACG-----------CCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 149864 0.67 0.957049
Target:  5'- --cGGGCUcgcgUCGUCGU-CGGcGGCGGCg -3'
miRNA:   3'- cauUCUGA----AGCGGCAcGCCuUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 149428 0.69 0.929593
Target:  5'- ---cGGCggucgcgCGCCgGUGCGGAGagcuGCGGCg -3'
miRNA:   3'- cauuCUGaa-----GCGG-CACGCCUU----CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 149338 0.7 0.893203
Target:  5'- -----cCUUCGCCGUcGCGGAAGUcgaccucucccgAGCu -3'
miRNA:   3'- cauucuGAAGCGGCA-CGCCUUCG------------UCG- -5'
24360 5' -52.6 NC_005264.1 + 145968 0.66 0.98267
Target:  5'- ---cGAcCUUCGCCG-GCGcGAauacgaacugcgcGGCGGCu -3'
miRNA:   3'- cauuCU-GAAGCGGCaCGC-CU-------------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 140196 0.69 0.90632
Target:  5'- cGUGGGcCUUUGCCGUGUucgaagucccucGGGccaagacuuGGCGGCg -3'
miRNA:   3'- -CAUUCuGAAGCGGCACG------------CCU---------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 138663 0.67 0.964283
Target:  5'- --cAGACUUUaCCGaccGCGGccGCAGCa -3'
miRNA:   3'- cauUCUGAAGcGGCa--CGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 138077 0.69 0.917872
Target:  5'- -aGAGACa-CGCCGUGCuGGAuguacaaGGaCAGCa -3'
miRNA:   3'- caUUCUGaaGCGGCACG-CCU-------UC-GUCG- -5'
24360 5' -52.6 NC_005264.1 + 137990 1.13 0.003587
Target:  5'- gGUAAGACUUCGCCGUGCGGAAGCAGCg -3'
miRNA:   3'- -CAUUCUGAAGCGGCACGCCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 136949 0.68 0.934786
Target:  5'- -gAAGGCgcagCGCCccacuGUGCGGAGucuGCAGUc -3'
miRNA:   3'- caUUCUGaa--GCGG-----CACGCCUU---CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 132342 0.66 0.98287
Target:  5'- -gAGGACg--GCCGcGCGG-AGCAGg -3'
miRNA:   3'- caUUCUGaagCGGCaCGCCuUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 129554 0.68 0.93973
Target:  5'- --uAGGCgUCGCCGcGUGGucGUGGCa -3'
miRNA:   3'- cauUCUGaAGCGGCaCGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 129427 0.7 0.864133
Target:  5'- -gGAGGgaUCGUCGaGCGGGaucguGGCAGCa -3'
miRNA:   3'- caUUCUgaAGCGGCaCGCCU-----UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 127386 0.68 0.93973
Target:  5'- cGUcAGGCgaugguuaCGUgGUGCGGcAGGCAGCc -3'
miRNA:   3'- -CAuUCUGaa------GCGgCACGCC-UUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 125469 0.69 0.924149
Target:  5'- ---cGGCgUCGCUG-GCGGAgaacuccucGGCGGCg -3'
miRNA:   3'- cauuCUGaAGCGGCaCGCCU---------UCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.