Results 61 - 73 of 73 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 56741 | 0.71 | 0.577432 |
Target: 5'- cCUUUCCGCGgagGCCGAGaUugGCAC-GCa -3' miRNA: 3'- -GAGAGGCGC---UGGCUC-AugCGUGgCGa -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 13410 | 0.71 | 0.557795 |
Target: 5'- gCUCUCCGC-ACCG-GcGCGCgACCGCc -3' miRNA: 3'- -GAGAGGCGcUGGCuCaUGCG-UGGCGa -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 132437 | 0.71 | 0.557795 |
Target: 5'- gCUCUCCGC-ACCG-GcGCGCgACCGCc -3' miRNA: 3'- -GAGAGGCGcUGGCuCaUGCG-UGGCGa -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 96632 | 0.71 | 0.548047 |
Target: 5'- -cCUUCGCuGGCCGcGgagGCGCACCGCc -3' miRNA: 3'- gaGAGGCG-CUGGCuCa--UGCGUGGCGa -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 93034 | 0.71 | 0.548047 |
Target: 5'- gUCgUCCGCG-CCGAaUGCGUGCUGCUg -3' miRNA: 3'- gAG-AGGCGCuGGCUcAUGCGUGGCGA- -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 117308 | 0.71 | 0.538353 |
Target: 5'- gCUCUCCGCGugCGAcugagaagcGUGCGCGggUCGUc -3' miRNA: 3'- -GAGAGGCGCugGCU---------CAUGCGU--GGCGa -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 31230 | 0.72 | 0.509648 |
Target: 5'- uUCUCCGCGcgcGCCcac-GCGCGCCGCUc -3' miRNA: 3'- gAGAGGCGC---UGGcucaUGCGUGGCGA- -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 69047 | 0.73 | 0.471508 |
Target: 5'- uCUCUuuggCCGCGGCCGccgggcaGGUcaucgucgucGCGCACCGCa -3' miRNA: 3'- -GAGA----GGCGCUGGC-------UCA----------UGCGUGGCGa -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 77772 | 0.73 | 0.454328 |
Target: 5'- aUCUgacgaCGCGGCCGcAGagACGCACCGCg -3' miRNA: 3'- gAGAg----GCGCUGGC-UCa-UGCGUGGCGa -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 56313 | 0.75 | 0.354447 |
Target: 5'- -aCUCCGCGGCCGcgcugccgccGUcGCGCACCGCc -3' miRNA: 3'- gaGAGGCGCUGGCu---------CA-UGCGUGGCGa -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 21234 | 0.76 | 0.303761 |
Target: 5'- gCUUUCCGCGuugacgacgGCuCGAGUguGCGCGCCGCg -3' miRNA: 3'- -GAGAGGCGC---------UG-GCUCA--UGCGUGGCGa -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 78516 | 0.8 | 0.176499 |
Target: 5'- ---aCCGCG-CUGGGUACGCGCCGCUg -3' miRNA: 3'- gagaGGCGCuGGCUCAUGCGUGGCGA- -5' |
|||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 137111 | 1.08 | 0.00241 |
Target: 5'- cCUCUCCGCGACCGAGUACGCACCGCUg -3' miRNA: 3'- -GAGAGGCGCUGGCUCAUGCGUGGCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home