miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24361 5' -58.4 NC_005264.1 + 79331 0.67 0.763345
Target:  5'- --aUuuGCGugCGuagcGUGCGCGCUGCUc -3'
miRNA:   3'- gagAggCGCugGCu---CAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 110859 0.68 0.74466
Target:  5'- cCUCUCgGCGAagaUCGAGcgugaGCGCGCCGaCa -3'
miRNA:   3'- -GAGAGgCGCU---GGCUCa----UGCGUGGC-Ga -5'
24361 5' -58.4 NC_005264.1 + 30391 0.68 0.74466
Target:  5'- gUCUCgGCGGCgGcGGUcGCGCGCCGgUg -3'
miRNA:   3'- gAGAGgCGCUGgC-UCA-UGCGUGGCgA- -5'
24361 5' -58.4 NC_005264.1 + 128564 0.68 0.74466
Target:  5'- aUUUCCGCGGCgGAGcgcagcACGCggauuACCGCg -3'
miRNA:   3'- gAGAGGCGCUGgCUCa-----UGCG-----UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 149418 0.68 0.74466
Target:  5'- gUCUCgGCGGCgGcGGUcGCGCGCCGgUg -3'
miRNA:   3'- gAGAGgCGCUGgC-UCA-UGCGUGGCgA- -5'
24361 5' -58.4 NC_005264.1 + 104800 0.68 0.735173
Target:  5'- cCUCuUUCGCGAgaCGAGcGgGCGCCGCa -3'
miRNA:   3'- -GAG-AGGCGCUg-GCUCaUgCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 113032 0.68 0.725601
Target:  5'- uUUUCCGCGGCCGcg-ACuGgGCCGCg -3'
miRNA:   3'- gAGAGGCGCUGGCucaUG-CgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 81391 0.68 0.725601
Target:  5'- -aCUgCCGaGAUgcaugCGGGUGCGCGCCGCUu -3'
miRNA:   3'- gaGA-GGCgCUG-----GCUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 87517 0.68 0.725601
Target:  5'- -gCUCCGCGAUCGAugagcCGC-CCGCg -3'
miRNA:   3'- gaGAGGCGCUGGCUcau--GCGuGGCGa -5'
24361 5' -58.4 NC_005264.1 + 132274 0.68 0.715953
Target:  5'- cCUCUCCuGCGACCccgccGGUagaagugaucGCGaCACCGCg -3'
miRNA:   3'- -GAGAGG-CGCUGGc----UCA----------UGC-GUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 45329 0.68 0.715953
Target:  5'- -----aGCGACCGcAG-ACGCGCCGCg -3'
miRNA:   3'- gagaggCGCUGGC-UCaUGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 111836 0.69 0.676766
Target:  5'- uUCUCCGCGAgUaucuucCGCACCGCUg -3'
miRNA:   3'- gAGAGGCGCUgGcucau-GCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 49802 0.69 0.676766
Target:  5'- aUCgCCGCGGCCcAGU-CGCgGCCGCg -3'
miRNA:   3'- gAGaGGCGCUGGcUCAuGCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 87146 0.69 0.676766
Target:  5'- gUCUUCGCG-CCGAaagacgGCGCugCGCg -3'
miRNA:   3'- gAGAGGCGCuGGCUca----UGCGugGCGa -5'
24361 5' -58.4 NC_005264.1 + 48854 0.69 0.676766
Target:  5'- aUCUCCGCGGUCGuGUcgucgcuucugACGCGCCGg- -3'
miRNA:   3'- gAGAGGCGCUGGCuCA-----------UGCGUGGCga -5'
24361 5' -58.4 NC_005264.1 + 58742 0.69 0.676766
Target:  5'- --aUCCGCGGCCGc---CGCugCGCUa -3'
miRNA:   3'- gagAGGCGCUGGCucauGCGugGCGA- -5'
24361 5' -58.4 NC_005264.1 + 85069 0.69 0.655938
Target:  5'- gUCUCUGCGGCCGcgucgucagauucGGaUACGgCGCCGUa -3'
miRNA:   3'- gAGAGGCGCUGGC-------------UC-AUGC-GUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 51928 0.7 0.627058
Target:  5'- gUCgUCCGCG-CCGAGcUugGCgaggguGCCGCUa -3'
miRNA:   3'- gAG-AGGCGCuGGCUC-AugCG------UGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 113507 0.7 0.597216
Target:  5'- -cCUCCG-GGCCGAGcGCGaacaGCCGCg -3'
miRNA:   3'- gaGAGGCgCUGGCUCaUGCg---UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 40782 0.71 0.577432
Target:  5'- aUCuUCCGCGgcGCCGAGaGCGgaGCCGCUu -3'
miRNA:   3'- gAG-AGGCGC--UGGCUCaUGCg-UGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.