miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24361 5' -58.4 NC_005264.1 + 79722 0.66 0.824833
Target:  5'- -cCUCCGCGGCCuug-GCGC-CCGUc -3'
miRNA:   3'- gaGAGGCGCUGGcucaUGCGuGGCGa -5'
24361 5' -58.4 NC_005264.1 + 801 0.66 0.824833
Target:  5'- -gCUCCaguaCGGCUGGGUGCGCgGCCgGCUu -3'
miRNA:   3'- gaGAGGc---GCUGGCUCAUGCG-UGG-CGA- -5'
24361 5' -58.4 NC_005264.1 + 132570 0.66 0.816486
Target:  5'- gUCgUCGCGGCCGcgcuacacuucGGUGCagcgugGCACCGCUu -3'
miRNA:   3'- gAGaGGCGCUGGC-----------UCAUG------CGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 160073 0.67 0.807981
Target:  5'- -aCUCCccagacgguacgGCG-CCGGGggACGCGCCGUUa -3'
miRNA:   3'- gaGAGG------------CGCuGGCUCa-UGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 41046 0.67 0.807981
Target:  5'- -aCUCCccagacgguacgGCG-CCGGGggACGCGCCGUUa -3'
miRNA:   3'- gaGAGG------------CGCuGGCUCa-UGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 49364 0.67 0.807981
Target:  5'- -aCUCgCGCGACCGuGGcACG-ACCGCg -3'
miRNA:   3'- gaGAG-GCGCUGGC-UCaUGCgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 126413 0.67 0.807981
Target:  5'- gUCUCCGCGGCCugcaGGUACuugggGCGCCu-- -3'
miRNA:   3'- gAGAGGCGCUGGc---UCAUG-----CGUGGcga -5'
24361 5' -58.4 NC_005264.1 + 37787 0.67 0.807981
Target:  5'- aCUCgaggCgaGCGGCgGAGaagagGCGCGCCGCc -3'
miRNA:   3'- -GAGa---Gg-CGCUGgCUCa----UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 152515 0.67 0.790524
Target:  5'- cCUCguUCCGCGcuuGCUcAGUGCGCGUCGCUg -3'
miRNA:   3'- -GAG--AGGCGC---UGGcUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 33488 0.67 0.790524
Target:  5'- cCUCguUCCGCGcuuGCUcAGUGCGCGUCGCUg -3'
miRNA:   3'- -GAG--AGGCGC---UGGcUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 124259 0.67 0.789636
Target:  5'- uUCuUCCGCGGCCucGGGUACGUuuagagcGCCGg- -3'
miRNA:   3'- gAG-AGGCGCUGG--CUCAUGCG-------UGGCga -5'
24361 5' -58.4 NC_005264.1 + 5232 0.67 0.789636
Target:  5'- uUCuUCCGCGGCCucGGGUACGUuuagagcGCCGg- -3'
miRNA:   3'- gAG-AGGCGCUGG--CUCAUGCG-------UGGCga -5'
24361 5' -58.4 NC_005264.1 + 44555 0.67 0.781588
Target:  5'- uUCUUgGUGGUCGGGUugGCgACCGCc -3'
miRNA:   3'- gAGAGgCGCUGGCUCAugCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 143280 0.67 0.781588
Target:  5'- cCUCUuuGauACCGAGgaagaGCACCGCc -3'
miRNA:   3'- -GAGAggCgcUGGCUCaug--CGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 20838 0.67 0.781588
Target:  5'- aUCUgCCGCGGCauaCGAcgGCGCugCGCg -3'
miRNA:   3'- gAGA-GGCGCUG---GCUcaUGCGugGCGa -5'
24361 5' -58.4 NC_005264.1 + 49803 0.67 0.781588
Target:  5'- -cCUCCGCG-UCGAgGUGCaGgGCCGCg -3'
miRNA:   3'- gaGAGGCGCuGGCU-CAUG-CgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 101401 0.67 0.781588
Target:  5'- -aCUCgGCG-CCGAGgaGCGgGCCGCc -3'
miRNA:   3'- gaGAGgCGCuGGCUCa-UGCgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 124030 0.67 0.763345
Target:  5'- uCUCgUCCGCGccggggucgccGCgGAGUACGuCACCGg- -3'
miRNA:   3'- -GAG-AGGCGC-----------UGgCUCAUGC-GUGGCga -5'
24361 5' -58.4 NC_005264.1 + 16103 0.67 0.763345
Target:  5'- -aCUgCGCGGCCGGGUucuuucUGCcCCGCUc -3'
miRNA:   3'- gaGAgGCGCUGGCUCAu-----GCGuGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 79331 0.67 0.763345
Target:  5'- --aUuuGCGugCGuagcGUGCGCGCUGCUc -3'
miRNA:   3'- gagAggCGCugGCu---CAUGCGUGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.