miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24361 5' -58.4 NC_005264.1 + 48854 0.69 0.676766
Target:  5'- aUCUCCGCGGUCGuGUcgucgcuucugACGCGCCGg- -3'
miRNA:   3'- gAGAGGCGCUGGCuCA-----------UGCGUGGCga -5'
24361 5' -58.4 NC_005264.1 + 49364 0.67 0.807981
Target:  5'- -aCUCgCGCGACCGuGGcACG-ACCGCg -3'
miRNA:   3'- gaGAG-GCGCUGGC-UCaUGCgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 49802 0.69 0.676766
Target:  5'- aUCgCCGCGGCCcAGU-CGCgGCCGCg -3'
miRNA:   3'- gAGaGGCGCUGGcUCAuGCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 49803 0.67 0.781588
Target:  5'- -cCUCCGCG-UCGAgGUGCaGgGCCGCg -3'
miRNA:   3'- gaGAGGCGCuGGCU-CAUG-CgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 51928 0.7 0.627058
Target:  5'- gUCgUCCGCG-CCGAGcUugGCgaggguGCCGCUa -3'
miRNA:   3'- gAG-AGGCGCuGGCUC-AugCG------UGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 56313 0.75 0.354447
Target:  5'- -aCUCCGCGGCCGcgcugccgccGUcGCGCACCGCc -3'
miRNA:   3'- gaGAGGCGCUGGCu---------CA-UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 56741 0.71 0.577432
Target:  5'- cCUUUCCGCGgagGCCGAGaUugGCAC-GCa -3'
miRNA:   3'- -GAGAGGCGC---UGGCUC-AugCGUGgCGa -5'
24361 5' -58.4 NC_005264.1 + 58742 0.69 0.676766
Target:  5'- --aUCCGCGGCCGc---CGCugCGCUa -3'
miRNA:   3'- gagAGGCGCUGGCucauGCGugGCGA- -5'
24361 5' -58.4 NC_005264.1 + 58865 0.66 0.848849
Target:  5'- gUUUCUuCGGCCGuagGGUGCGCAgCGCc -3'
miRNA:   3'- gAGAGGcGCUGGC---UCAUGCGUgGCGa -5'
24361 5' -58.4 NC_005264.1 + 60724 0.66 0.824833
Target:  5'- ---gCCGCGGCCucGUAC-CGCCGCc -3'
miRNA:   3'- gagaGGCGCUGGcuCAUGcGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 61450 0.66 0.841022
Target:  5'- -cCUCgGCG-CCGAGUugcucgaGCGCCGUUc -3'
miRNA:   3'- gaGAGgCGCuGGCUCAug-----CGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 68283 0.66 0.849622
Target:  5'- cCUCUuuGCGuCCccagcggcauuucucAGUGCgGCGCCGCUg -3'
miRNA:   3'- -GAGAggCGCuGGc--------------UCAUG-CGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 69047 0.73 0.471508
Target:  5'- uCUCUuuggCCGCGGCCGccgggcaGGUcaucgucgucGCGCACCGCa -3'
miRNA:   3'- -GAGA----GGCGCUGGC-------UCA----------UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 70328 0.66 0.848849
Target:  5'- aCUCgUCCGCGgauccacagaugGCC-AG-GCGCACCGCc -3'
miRNA:   3'- -GAG-AGGCGC------------UGGcUCaUGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 76263 0.66 0.848849
Target:  5'- gUCUCaCGCagaucGCCaGAGUGCGCACC-Cg -3'
miRNA:   3'- gAGAG-GCGc----UGG-CUCAUGCGUGGcGa -5'
24361 5' -58.4 NC_005264.1 + 77772 0.73 0.454328
Target:  5'- aUCUgacgaCGCGGCCGcAGagACGCACCGCg -3'
miRNA:   3'- gAGAg----GCGCUGGC-UCa-UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 78516 0.8 0.176499
Target:  5'- ---aCCGCG-CUGGGUACGCGCCGCUg -3'
miRNA:   3'- gagaGGCGCuGGCUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 79331 0.67 0.763345
Target:  5'- --aUuuGCGugCGuagcGUGCGCGCUGCUc -3'
miRNA:   3'- gagAggCGCugGCu---CAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 79722 0.66 0.824833
Target:  5'- -cCUCCGCGGCCuug-GCGC-CCGUc -3'
miRNA:   3'- gaGAGGCGCUGGcucaUGCGuGGCGa -5'
24361 5' -58.4 NC_005264.1 + 81391 0.68 0.725601
Target:  5'- -aCUgCCGaGAUgcaugCGGGUGCGCGCCGCUu -3'
miRNA:   3'- gaGA-GGCgCUG-----GCUCAUGCGUGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.