miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24361 5' -58.4 NC_005264.1 + 801 0.66 0.824833
Target:  5'- -gCUCCaguaCGGCUGGGUGCGCgGCCgGCUu -3'
miRNA:   3'- gaGAGGc---GCUGGCUCAUGCG-UGG-CGA- -5'
24361 5' -58.4 NC_005264.1 + 5003 0.67 0.763345
Target:  5'- uCUCgUCCGCGccggggucgccGCgGAGUACGuCACCGg- -3'
miRNA:   3'- -GAG-AGGCGC-----------UGgCUCAUGC-GUGGCga -5'
24361 5' -58.4 NC_005264.1 + 5232 0.67 0.789636
Target:  5'- uUCuUCCGCGGCCucGGGUACGUuuagagcGCCGg- -3'
miRNA:   3'- gAG-AGGCGCUGG--CUCAUGCG-------UGGCga -5'
24361 5' -58.4 NC_005264.1 + 13410 0.71 0.557795
Target:  5'- gCUCUCCGC-ACCG-GcGCGCgACCGCc -3'
miRNA:   3'- -GAGAGGCGcUGGCuCaUGCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 16103 0.67 0.763345
Target:  5'- -aCUgCGCGGCCGGGUucuuucUGCcCCGCUc -3'
miRNA:   3'- gaGAgGCGCUGGCUCAu-----GCGuGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 16201 0.66 0.841022
Target:  5'- gUCUaCCG-GACaaCGGGggACGCGCCGCg -3'
miRNA:   3'- gAGA-GGCgCUG--GCUCa-UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 20838 0.67 0.781588
Target:  5'- aUCUgCCGCGGCauaCGAcgGCGCugCGCg -3'
miRNA:   3'- gAGA-GGCGCUG---GCUcaUGCGugGCGa -5'
24361 5' -58.4 NC_005264.1 + 21234 0.76 0.303761
Target:  5'- gCUUUCCGCGuugacgacgGCuCGAGUguGCGCGCCGCg -3'
miRNA:   3'- -GAGAGGCGC---------UG-GCUCA--UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 23386 0.66 0.856491
Target:  5'- aUCUCuCGCGAaCGAGUuauAC-CGCCGCc -3'
miRNA:   3'- gAGAG-GCGCUgGCUCA---UGcGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 29337 0.66 0.856491
Target:  5'- cCUC-CUGCGgcuacgacgucuGCCGGGUACGC-CgGCUu -3'
miRNA:   3'- -GAGaGGCGC------------UGGCUCAUGCGuGgCGA- -5'
24361 5' -58.4 NC_005264.1 + 30391 0.68 0.74466
Target:  5'- gUCUCgGCGGCgGcGGUcGCGCGCCGgUg -3'
miRNA:   3'- gAGAGgCGCUGgC-UCA-UGCGUGGCgA- -5'
24361 5' -58.4 NC_005264.1 + 31230 0.72 0.509648
Target:  5'- uUCUCCGCGcgcGCCcac-GCGCGCCGCUc -3'
miRNA:   3'- gAGAGGCGC---UGGcucaUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 33276 0.66 0.824833
Target:  5'- --aUCCGCGcccCUGAGgGCgGCGCCGCa -3'
miRNA:   3'- gagAGGCGCu--GGCUCaUG-CGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 33488 0.67 0.790524
Target:  5'- cCUCguUCCGCGcuuGCUcAGUGCGCGUCGCUg -3'
miRNA:   3'- -GAG--AGGCGC---UGGcUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 37787 0.67 0.807981
Target:  5'- aCUCgaggCgaGCGGCgGAGaagagGCGCGCCGCc -3'
miRNA:   3'- -GAGa---Gg-CGCUGgCUCa----UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 40782 0.71 0.577432
Target:  5'- aUCuUCCGCGgcGCCGAGaGCGgaGCCGCUu -3'
miRNA:   3'- gAG-AGGCGC--UGGCUCaUGCg-UGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 41046 0.67 0.807981
Target:  5'- -aCUCCccagacgguacgGCG-CCGGGggACGCGCCGUUa -3'
miRNA:   3'- gaGAGG------------CGCuGGCUCa-UGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 41473 0.66 0.848849
Target:  5'- -aUUCCGCGugUGcGUACGUGCgCGUa -3'
miRNA:   3'- gaGAGGCGCugGCuCAUGCGUG-GCGa -5'
24361 5' -58.4 NC_005264.1 + 44555 0.67 0.781588
Target:  5'- uUCUUgGUGGUCGGGUugGCgACCGCc -3'
miRNA:   3'- gAGAGgCGCUGGCUCAugCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 45329 0.68 0.715953
Target:  5'- -----aGCGACCGcAG-ACGCGCCGCg -3'
miRNA:   3'- gagaggCGCUGGC-UCaUGCGUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.