miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24361 5' -58.4 NC_005264.1 + 152515 0.67 0.790524
Target:  5'- cCUCguUCCGCGcuuGCUcAGUGCGCGUCGCUg -3'
miRNA:   3'- -GAG--AGGCGC---UGGcUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 16103 0.67 0.763345
Target:  5'- -aCUgCGCGGCCGGGUucuuucUGCcCCGCUc -3'
miRNA:   3'- gaGAgGCGCUGGCUCAu-----GCGuGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 124030 0.67 0.763345
Target:  5'- uCUCgUCCGCGccggggucgccGCgGAGUACGuCACCGg- -3'
miRNA:   3'- -GAG-AGGCGC-----------UGgCUCAUGC-GUGGCga -5'
24361 5' -58.4 NC_005264.1 + 79331 0.67 0.763345
Target:  5'- --aUuuGCGugCGuagcGUGCGCGCUGCUc -3'
miRNA:   3'- gagAggCGCugGCu---CAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 44555 0.67 0.781588
Target:  5'- uUCUUgGUGGUCGGGUugGCgACCGCc -3'
miRNA:   3'- gAGAGgCGCUGGCUCAugCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 143280 0.67 0.781588
Target:  5'- cCUCUuuGauACCGAGgaagaGCACCGCc -3'
miRNA:   3'- -GAGAggCgcUGGCUCaug--CGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 20838 0.67 0.781588
Target:  5'- aUCUgCCGCGGCauaCGAcgGCGCugCGCg -3'
miRNA:   3'- gAGA-GGCGCUG---GCUcaUGCGugGCGa -5'
24361 5' -58.4 NC_005264.1 + 49803 0.67 0.781588
Target:  5'- -cCUCCGCG-UCGAgGUGCaGgGCCGCg -3'
miRNA:   3'- gaGAGGCGCuGGCU-CAUG-CgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 124259 0.67 0.789636
Target:  5'- uUCuUCCGCGGCCucGGGUACGUuuagagcGCCGg- -3'
miRNA:   3'- gAG-AGGCGCUGG--CUCAUGCG-------UGGCga -5'
24361 5' -58.4 NC_005264.1 + 149418 0.68 0.74466
Target:  5'- gUCUCgGCGGCgGcGGUcGCGCGCCGgUg -3'
miRNA:   3'- gAGAGgCGCUGgC-UCA-UGCGUGGCgA- -5'
24361 5' -58.4 NC_005264.1 + 113032 0.68 0.725601
Target:  5'- uUUUCCGCGGCCGcg-ACuGgGCCGCg -3'
miRNA:   3'- gAGAGGCGCUGGCucaUG-CgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 48854 0.69 0.676766
Target:  5'- aUCUCCGCGGUCGuGUcgucgcuucugACGCGCCGg- -3'
miRNA:   3'- gAGAGGCGCUGGCuCA-----------UGCGUGGCga -5'
24361 5' -58.4 NC_005264.1 + 56313 0.75 0.354447
Target:  5'- -aCUCCGCGGCCGcgcugccgccGUcGCGCACCGCc -3'
miRNA:   3'- gaGAGGCGCUGGCu---------CA-UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 77772 0.73 0.454328
Target:  5'- aUCUgacgaCGCGGCCGcAGagACGCACCGCg -3'
miRNA:   3'- gAGAg----GCGCUGGC-UCa-UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 31230 0.72 0.509648
Target:  5'- uUCUCCGCGcgcGCCcac-GCGCGCCGCUc -3'
miRNA:   3'- gAGAGGCGC---UGGcucaUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 117308 0.71 0.538353
Target:  5'- gCUCUCCGCGugCGAcugagaagcGUGCGCGggUCGUc -3'
miRNA:   3'- -GAGAGGCGCugGCU---------CAUGCGU--GGCGa -5'
24361 5' -58.4 NC_005264.1 + 132437 0.71 0.557795
Target:  5'- gCUCUCCGC-ACCG-GcGCGCgACCGCc -3'
miRNA:   3'- -GAGAGGCGcUGGCuCaUGCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 40782 0.71 0.577432
Target:  5'- aUCuUCCGCGgcGCCGAGaGCGgaGCCGCUu -3'
miRNA:   3'- gAG-AGGCGC--UGGCUCaUGCg-UGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 51928 0.7 0.627058
Target:  5'- gUCgUCCGCG-CCGAGcUugGCgaggguGCCGCUa -3'
miRNA:   3'- gAG-AGGCGCuGGCUC-AugCG------UGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 58742 0.69 0.676766
Target:  5'- --aUCCGCGGCCGc---CGCugCGCUa -3'
miRNA:   3'- gagAGGCGCUGGCucauGCGugGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.