Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 23386 | 0.66 | 0.856491 |
Target: 5'- aUCUCuCGCGAaCGAGUuauAC-CGCCGCc -3' miRNA: 3'- gAGAG-GCGCUgGCUCA---UGcGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 5232 | 0.67 | 0.789636 |
Target: 5'- uUCuUCCGCGGCCucGGGUACGUuuagagcGCCGg- -3' miRNA: 3'- gAG-AGGCGCUGG--CUCAUGCG-------UGGCga -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 5003 | 0.67 | 0.763345 |
Target: 5'- uCUCgUCCGCGccggggucgccGCgGAGUACGuCACCGg- -3' miRNA: 3'- -GAG-AGGCGC-----------UGgCUCAUGC-GUGGCga -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 137111 | 1.08 | 0.00241 |
Target: 5'- cCUCUCCGCGACCGAGUACGCACCGCUg -3' miRNA: 3'- -GAGAGGCGCUGGCUCAUGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 70328 | 0.66 | 0.848849 |
Target: 5'- aCUCgUCCGCGgauccacagaugGCC-AG-GCGCACCGCc -3' miRNA: 3'- -GAG-AGGCGC------------UGGcUCaUGCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 58865 | 0.66 | 0.848849 |
Target: 5'- gUUUCUuCGGCCGuagGGUGCGCAgCGCc -3' miRNA: 3'- gAGAGGcGCUGGC---UCAUGCGUgGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 122788 | 0.66 | 0.833014 |
Target: 5'- ---cCCGCGACCucgaaaccaGAGUguuaGCGCcACCGCa -3' miRNA: 3'- gagaGGCGCUGG---------CUCA----UGCG-UGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 104312 | 0.66 | 0.833014 |
Target: 5'- uUUUUCGUGACCuuGAGgcGCGaCGCCGCUu -3' miRNA: 3'- gAGAGGCGCUGG--CUCa-UGC-GUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 153947 | 0.66 | 0.824833 |
Target: 5'- gUCUCCaGCGACaCGuuGUACGUACagaGCc -3' miRNA: 3'- gAGAGG-CGCUG-GCu-CAUGCGUGg--CGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 33488 | 0.67 | 0.790524 |
Target: 5'- cCUCguUCCGCGcuuGCUcAGUGCGCGUCGCUg -3' miRNA: 3'- -GAG--AGGCGC---UGGcUCAUGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 126413 | 0.67 | 0.807981 |
Target: 5'- gUCUCCGCGGCCugcaGGUACuugggGCGCCu-- -3' miRNA: 3'- gAGAGGCGCUGGc---UCAUG-----CGUGGcga -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 33276 | 0.66 | 0.824833 |
Target: 5'- --aUCCGCGcccCUGAGgGCgGCGCCGCa -3' miRNA: 3'- gagAGGCGCu--GGCUCaUG-CGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 29337 | 0.66 | 0.856491 |
Target: 5'- cCUC-CUGCGgcuacgacgucuGCCGGGUACGC-CgGCUu -3' miRNA: 3'- -GAGaGGCGC------------UGGCUCAUGCGuGgCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 49364 | 0.67 | 0.807981 |
Target: 5'- -aCUCgCGCGACCGuGGcACG-ACCGCg -3' miRNA: 3'- gaGAG-GCGCUGGC-UCaUGCgUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 133039 | 0.66 | 0.848849 |
Target: 5'- cCUUUCCGCGGC--GGUGCGCGuguuucuggcUCGCa -3' miRNA: 3'- -GAGAGGCGCUGgcUCAUGCGU----------GGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 95504 | 0.66 | 0.828126 |
Target: 5'- cCUCUUCGCGGCggCGAucGUACGUgacguuauggaaggcGCCGCc -3' miRNA: 3'- -GAGAGGCGCUG--GCU--CAUGCG---------------UGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 41046 | 0.67 | 0.807981 |
Target: 5'- -aCUCCccagacgguacgGCG-CCGGGggACGCGCCGUUa -3' miRNA: 3'- gaGAGG------------CGCuGGCUCa-UGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 101401 | 0.67 | 0.781588 |
Target: 5'- -aCUCgGCG-CCGAGgaGCGgGCCGCc -3' miRNA: 3'- gaGAGgCGCuGGCUCa-UGCgUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 100217 | 0.66 | 0.848849 |
Target: 5'- -gCUCCGCGGggcgcaguugcUCGGaacGUcCGCGCCGCUa -3' miRNA: 3'- gaGAGGCGCU-----------GGCU---CAuGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 144409 | 0.66 | 0.841022 |
Target: 5'- uUCgaccCCGCG-CCGAGcgagaggGCGCGCCuGCg -3' miRNA: 3'- gAGa---GGCGCuGGCUCa------UGCGUGG-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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