miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24361 5' -58.4 NC_005264.1 + 137111 1.08 0.00241
Target:  5'- cCUCUCCGCGACCGAGUACGCACCGCUg -3'
miRNA:   3'- -GAGAGGCGCUGGCUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 78516 0.8 0.176499
Target:  5'- ---aCCGCG-CUGGGUACGCGCCGCUg -3'
miRNA:   3'- gagaGGCGCuGGCUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 21234 0.76 0.303761
Target:  5'- gCUUUCCGCGuugacgacgGCuCGAGUguGCGCGCCGCg -3'
miRNA:   3'- -GAGAGGCGC---------UG-GCUCA--UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 56313 0.75 0.354447
Target:  5'- -aCUCCGCGGCCGcgcugccgccGUcGCGCACCGCc -3'
miRNA:   3'- gaGAGGCGCUGGCu---------CA-UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 77772 0.73 0.454328
Target:  5'- aUCUgacgaCGCGGCCGcAGagACGCACCGCg -3'
miRNA:   3'- gAGAg----GCGCUGGC-UCa-UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 69047 0.73 0.471508
Target:  5'- uCUCUuuggCCGCGGCCGccgggcaGGUcaucgucgucGCGCACCGCa -3'
miRNA:   3'- -GAGA----GGCGCUGGC-------UCA----------UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 31230 0.72 0.509648
Target:  5'- uUCUCCGCGcgcGCCcac-GCGCGCCGCUc -3'
miRNA:   3'- gAGAGGCGC---UGGcucaUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 117308 0.71 0.538353
Target:  5'- gCUCUCCGCGugCGAcugagaagcGUGCGCGggUCGUc -3'
miRNA:   3'- -GAGAGGCGCugGCU---------CAUGCGU--GGCGa -5'
24361 5' -58.4 NC_005264.1 + 93034 0.71 0.548047
Target:  5'- gUCgUCCGCG-CCGAaUGCGUGCUGCUg -3'
miRNA:   3'- gAG-AGGCGCuGGCUcAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 96632 0.71 0.548047
Target:  5'- -cCUUCGCuGGCCGcGgagGCGCACCGCc -3'
miRNA:   3'- gaGAGGCG-CUGGCuCa--UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 132437 0.71 0.557795
Target:  5'- gCUCUCCGC-ACCG-GcGCGCgACCGCc -3'
miRNA:   3'- -GAGAGGCGcUGGCuCaUGCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 13410 0.71 0.557795
Target:  5'- gCUCUCCGC-ACCG-GcGCGCgACCGCc -3'
miRNA:   3'- -GAGAGGCGcUGGCuCaUGCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 56741 0.71 0.577432
Target:  5'- cCUUUCCGCGgagGCCGAGaUugGCAC-GCa -3'
miRNA:   3'- -GAGAGGCGC---UGGCUC-AugCGUGgCGa -5'
24361 5' -58.4 NC_005264.1 + 40782 0.71 0.577432
Target:  5'- aUCuUCCGCGgcGCCGAGaGCGgaGCCGCUu -3'
miRNA:   3'- gAG-AGGCGC--UGGCUCaUGCg-UGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 113507 0.7 0.597216
Target:  5'- -cCUCCG-GGCCGAGcGCGaacaGCCGCg -3'
miRNA:   3'- gaGAGGCgCUGGCUCaUGCg---UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 51928 0.7 0.627058
Target:  5'- gUCgUCCGCG-CCGAGcUugGCgaggguGCCGCUa -3'
miRNA:   3'- gAG-AGGCGCuGGCUC-AugCG------UGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 85069 0.69 0.655938
Target:  5'- gUCUCUGCGGCCGcgucgucagauucGGaUACGgCGCCGUa -3'
miRNA:   3'- gAGAGGCGCUGGC-------------UC-AUGC-GUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 87146 0.69 0.676766
Target:  5'- gUCUUCGCG-CCGAaagacgGCGCugCGCg -3'
miRNA:   3'- gAGAGGCGCuGGCUca----UGCGugGCGa -5'
24361 5' -58.4 NC_005264.1 + 49802 0.69 0.676766
Target:  5'- aUCgCCGCGGCCcAGU-CGCgGCCGCg -3'
miRNA:   3'- gAGaGGCGCUGGcUCAuGCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 111836 0.69 0.676766
Target:  5'- uUCUCCGCGAgUaucuucCGCACCGCUg -3'
miRNA:   3'- gAGAGGCGCUgGcucau-GCGUGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.