Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 77772 | 0.73 | 0.454328 |
Target: 5'- aUCUgacgaCGCGGCCGcAGagACGCACCGCg -3' miRNA: 3'- gAGAg----GCGCUGGC-UCa-UGCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 31230 | 0.72 | 0.509648 |
Target: 5'- uUCUCCGCGcgcGCCcac-GCGCGCCGCUc -3' miRNA: 3'- gAGAGGCGC---UGGcucaUGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 117308 | 0.71 | 0.538353 |
Target: 5'- gCUCUCCGCGugCGAcugagaagcGUGCGCGggUCGUc -3' miRNA: 3'- -GAGAGGCGCugGCU---------CAUGCGU--GGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 132437 | 0.71 | 0.557795 |
Target: 5'- gCUCUCCGC-ACCG-GcGCGCgACCGCc -3' miRNA: 3'- -GAGAGGCGcUGGCuCaUGCG-UGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 40782 | 0.71 | 0.577432 |
Target: 5'- aUCuUCCGCGgcGCCGAGaGCGgaGCCGCUu -3' miRNA: 3'- gAG-AGGCGC--UGGCUCaUGCg-UGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 51928 | 0.7 | 0.627058 |
Target: 5'- gUCgUCCGCG-CCGAGcUugGCgaggguGCCGCUa -3' miRNA: 3'- gAG-AGGCGCuGGCUC-AugCG------UGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 58742 | 0.69 | 0.676766 |
Target: 5'- --aUCCGCGGCCGc---CGCugCGCUa -3' miRNA: 3'- gagAGGCGCUGGCucauGCGugGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 79331 | 0.67 | 0.763345 |
Target: 5'- --aUuuGCGugCGuagcGUGCGCGCUGCUc -3' miRNA: 3'- gagAggCGCugGCu---CAUGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 124030 | 0.67 | 0.763345 |
Target: 5'- uCUCgUCCGCGccggggucgccGCgGAGUACGuCACCGg- -3' miRNA: 3'- -GAG-AGGCGC-----------UGgCUCAUGC-GUGGCga -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 16103 | 0.67 | 0.763345 |
Target: 5'- -aCUgCGCGGCCGGGUucuuucUGCcCCGCUc -3' miRNA: 3'- gaGAgGCGCUGGCUCAu-----GCGuGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 149418 | 0.68 | 0.74466 |
Target: 5'- gUCUCgGCGGCgGcGGUcGCGCGCCGgUg -3' miRNA: 3'- gAGAGgCGCUGgC-UCA-UGCGUGGCgA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 113032 | 0.68 | 0.725601 |
Target: 5'- uUUUCCGCGGCCGcg-ACuGgGCCGCg -3' miRNA: 3'- gAGAGGCGCUGGCucaUG-CgUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 48854 | 0.69 | 0.676766 |
Target: 5'- aUCUCCGCGGUCGuGUcgucgcuucugACGCGCCGg- -3' miRNA: 3'- gAGAGGCGCUGGCuCA-----------UGCGUGGCga -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 144409 | 0.66 | 0.841022 |
Target: 5'- uUCgaccCCGCG-CCGAGcgagaggGCGCGCCuGCg -3' miRNA: 3'- gAGa---GGCGCuGGCUCa------UGCGUGG-CGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 58865 | 0.66 | 0.848849 |
Target: 5'- gUUUCUuCGGCCGuagGGUGCGCAgCGCc -3' miRNA: 3'- gAGAGGcGCUGGC---UCAUGCGUgGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 70328 | 0.66 | 0.848849 |
Target: 5'- aCUCgUCCGCGgauccacagaugGCC-AG-GCGCACCGCc -3' miRNA: 3'- -GAG-AGGCGC------------UGGcUCaUGCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 100217 | 0.66 | 0.848849 |
Target: 5'- -gCUCCGCGGggcgcaguugcUCGGaacGUcCGCGCCGCUa -3' miRNA: 3'- gaGAGGCGCU-----------GGCU---CAuGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 133039 | 0.66 | 0.848849 |
Target: 5'- cCUUUCCGCGGC--GGUGCGCGuguuucuggcUCGCa -3' miRNA: 3'- -GAGAGGCGCUGgcUCAUGCGU----------GGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 29337 | 0.66 | 0.856491 |
Target: 5'- cCUC-CUGCGgcuacgacgucuGCCGGGUACGC-CgGCUu -3' miRNA: 3'- -GAGaGGCGC------------UGGCUCAUGCGuGgCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 137111 | 1.08 | 0.00241 |
Target: 5'- cCUCUCCGCGACCGAGUACGCACCGCUg -3' miRNA: 3'- -GAGAGGCGCUGGCUCAUGCGUGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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