miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24361 5' -58.4 NC_005264.1 + 160073 0.67 0.807981
Target:  5'- -aCUCCccagacgguacgGCG-CCGGGggACGCGCCGUUa -3'
miRNA:   3'- gaGAGG------------CGCuGGCUCa-UGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 153947 0.66 0.824833
Target:  5'- gUCUCCaGCGACaCGuuGUACGUACagaGCc -3'
miRNA:   3'- gAGAGG-CGCUG-GCu-CAUGCGUGg--CGa -5'
24361 5' -58.4 NC_005264.1 + 152515 0.67 0.790524
Target:  5'- cCUCguUCCGCGcuuGCUcAGUGCGCGUCGCUg -3'
miRNA:   3'- -GAG--AGGCGC---UGGcUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 152303 0.66 0.824833
Target:  5'- --aUCCGCGcccCUGAGgGCgGCGCCGCa -3'
miRNA:   3'- gagAGGCGCu--GGCUCaUG-CGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 149418 0.68 0.74466
Target:  5'- gUCUCgGCGGCgGcGGUcGCGCGCCGgUg -3'
miRNA:   3'- gAGAGgCGCUGgC-UCA-UGCGUGGCgA- -5'
24361 5' -58.4 NC_005264.1 + 144409 0.66 0.841022
Target:  5'- uUCgaccCCGCG-CCGAGcgagaggGCGCGCCuGCg -3'
miRNA:   3'- gAGa---GGCGCuGGCUCa------UGCGUGG-CGa -5'
24361 5' -58.4 NC_005264.1 + 143280 0.67 0.781588
Target:  5'- cCUCUuuGauACCGAGgaagaGCACCGCc -3'
miRNA:   3'- -GAGAggCgcUGGCUCaug--CGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 137111 1.08 0.00241
Target:  5'- cCUCUCCGCGACCGAGUACGCACCGCUg -3'
miRNA:   3'- -GAGAGGCGCUGGCUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 133039 0.66 0.848849
Target:  5'- cCUUUCCGCGGC--GGUGCGCGuguuucuggcUCGCa -3'
miRNA:   3'- -GAGAGGCGCUGgcUCAUGCGU----------GGCGa -5'
24361 5' -58.4 NC_005264.1 + 132570 0.66 0.816486
Target:  5'- gUCgUCGCGGCCGcgcuacacuucGGUGCagcgugGCACCGCUu -3'
miRNA:   3'- gAGaGGCGCUGGC-----------UCAUG------CGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 132437 0.71 0.557795
Target:  5'- gCUCUCCGC-ACCG-GcGCGCgACCGCc -3'
miRNA:   3'- -GAGAGGCGcUGGCuCaUGCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 132274 0.68 0.715953
Target:  5'- cCUCUCCuGCGACCccgccGGUagaagugaucGCGaCACCGCg -3'
miRNA:   3'- -GAGAGG-CGCUGGc----UCA----------UGC-GUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 128564 0.68 0.74466
Target:  5'- aUUUCCGCGGCgGAGcgcagcACGCggauuACCGCg -3'
miRNA:   3'- gAGAGGCGCUGgCUCa-----UGCG-----UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 126413 0.67 0.807981
Target:  5'- gUCUCCGCGGCCugcaGGUACuugggGCGCCu-- -3'
miRNA:   3'- gAGAGGCGCUGGc---UCAUG-----CGUGGcga -5'
24361 5' -58.4 NC_005264.1 + 124259 0.67 0.789636
Target:  5'- uUCuUCCGCGGCCucGGGUACGUuuagagcGCCGg- -3'
miRNA:   3'- gAG-AGGCGCUGG--CUCAUGCG-------UGGCga -5'
24361 5' -58.4 NC_005264.1 + 124030 0.67 0.763345
Target:  5'- uCUCgUCCGCGccggggucgccGCgGAGUACGuCACCGg- -3'
miRNA:   3'- -GAG-AGGCGC-----------UGgCUCAUGC-GUGGCga -5'
24361 5' -58.4 NC_005264.1 + 122788 0.66 0.833014
Target:  5'- ---cCCGCGACCucgaaaccaGAGUguuaGCGCcACCGCa -3'
miRNA:   3'- gagaGGCGCUGG---------CUCA----UGCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 117308 0.71 0.538353
Target:  5'- gCUCUCCGCGugCGAcugagaagcGUGCGCGggUCGUc -3'
miRNA:   3'- -GAGAGGCGCugGCU---------CAUGCGU--GGCGa -5'
24361 5' -58.4 NC_005264.1 + 113507 0.7 0.597216
Target:  5'- -cCUCCG-GGCCGAGcGCGaacaGCCGCg -3'
miRNA:   3'- gaGAGGCgCUGGCUCaUGCg---UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 113032 0.68 0.725601
Target:  5'- uUUUCCGCGGCCGcg-ACuGgGCCGCg -3'
miRNA:   3'- gAGAGGCGCUGGCucaUG-CgUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.