miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24361 5' -58.4 NC_005264.1 + 85069 0.69 0.655938
Target:  5'- gUCUCUGCGGCCGcgucgucagauucGGaUACGgCGCCGUa -3'
miRNA:   3'- gAGAGGCGCUGGC-------------UC-AUGC-GUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 87146 0.69 0.676766
Target:  5'- gUCUUCGCG-CCGAaagacgGCGCugCGCg -3'
miRNA:   3'- gAGAGGCGCuGGCUca----UGCGugGCGa -5'
24361 5' -58.4 NC_005264.1 + 87517 0.68 0.725601
Target:  5'- -gCUCCGCGAUCGAugagcCGC-CCGCg -3'
miRNA:   3'- gaGAGGCGCUGGCUcau--GCGuGGCGa -5'
24361 5' -58.4 NC_005264.1 + 88833 0.66 0.833014
Target:  5'- uCUCUCgGCGACCGcauGUacaACGCuCgGCg -3'
miRNA:   3'- -GAGAGgCGCUGGCu--CA---UGCGuGgCGa -5'
24361 5' -58.4 NC_005264.1 + 93034 0.71 0.548047
Target:  5'- gUCgUCCGCG-CCGAaUGCGUGCUGCUg -3'
miRNA:   3'- gAG-AGGCGCuGGCUcAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 95504 0.66 0.828126
Target:  5'- cCUCUUCGCGGCggCGAucGUACGUgacguuauggaaggcGCCGCc -3'
miRNA:   3'- -GAGAGGCGCUG--GCU--CAUGCG---------------UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 96632 0.71 0.548047
Target:  5'- -cCUUCGCuGGCCGcGgagGCGCACCGCc -3'
miRNA:   3'- gaGAGGCG-CUGGCuCa--UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 100217 0.66 0.848849
Target:  5'- -gCUCCGCGGggcgcaguugcUCGGaacGUcCGCGCCGCUa -3'
miRNA:   3'- gaGAGGCGCU-----------GGCU---CAuGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 101401 0.67 0.781588
Target:  5'- -aCUCgGCG-CCGAGgaGCGgGCCGCc -3'
miRNA:   3'- gaGAGgCGCuGGCUCa-UGCgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 104312 0.66 0.833014
Target:  5'- uUUUUCGUGACCuuGAGgcGCGaCGCCGCUu -3'
miRNA:   3'- gAGAGGCGCUGG--CUCa-UGC-GUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 104800 0.68 0.735173
Target:  5'- cCUCuUUCGCGAgaCGAGcGgGCGCCGCa -3'
miRNA:   3'- -GAG-AGGCGCUg-GCUCaUgCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 110859 0.68 0.74466
Target:  5'- cCUCUCgGCGAagaUCGAGcgugaGCGCGCCGaCa -3'
miRNA:   3'- -GAGAGgCGCU---GGCUCa----UGCGUGGC-Ga -5'
24361 5' -58.4 NC_005264.1 + 111836 0.69 0.676766
Target:  5'- uUCUCCGCGAgUaucuucCGCACCGCUg -3'
miRNA:   3'- gAGAGGCGCUgGcucau-GCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 113032 0.68 0.725601
Target:  5'- uUUUCCGCGGCCGcg-ACuGgGCCGCg -3'
miRNA:   3'- gAGAGGCGCUGGCucaUG-CgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 113507 0.7 0.597216
Target:  5'- -cCUCCG-GGCCGAGcGCGaacaGCCGCg -3'
miRNA:   3'- gaGAGGCgCUGGCUCaUGCg---UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 117308 0.71 0.538353
Target:  5'- gCUCUCCGCGugCGAcugagaagcGUGCGCGggUCGUc -3'
miRNA:   3'- -GAGAGGCGCugGCU---------CAUGCGU--GGCGa -5'
24361 5' -58.4 NC_005264.1 + 122788 0.66 0.833014
Target:  5'- ---cCCGCGACCucgaaaccaGAGUguuaGCGCcACCGCa -3'
miRNA:   3'- gagaGGCGCUGG---------CUCA----UGCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 124030 0.67 0.763345
Target:  5'- uCUCgUCCGCGccggggucgccGCgGAGUACGuCACCGg- -3'
miRNA:   3'- -GAG-AGGCGC-----------UGgCUCAUGC-GUGGCga -5'
24361 5' -58.4 NC_005264.1 + 124259 0.67 0.789636
Target:  5'- uUCuUCCGCGGCCucGGGUACGUuuagagcGCCGg- -3'
miRNA:   3'- gAG-AGGCGCUGG--CUCAUGCG-------UGGCga -5'
24361 5' -58.4 NC_005264.1 + 126413 0.67 0.807981
Target:  5'- gUCUCCGCGGCCugcaGGUACuugggGCGCCu-- -3'
miRNA:   3'- gAGAGGCGCUGGc---UCAUG-----CGUGGcga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.