Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 30391 | 0.68 | 0.74466 |
Target: 5'- gUCUCgGCGGCgGcGGUcGCGCGCCGgUg -3' miRNA: 3'- gAGAGgCGCUGgC-UCA-UGCGUGGCgA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 104800 | 0.68 | 0.735173 |
Target: 5'- cCUCuUUCGCGAgaCGAGcGgGCGCCGCa -3' miRNA: 3'- -GAG-AGGCGCUg-GCUCaUgCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 87517 | 0.68 | 0.725601 |
Target: 5'- -gCUCCGCGAUCGAugagcCGC-CCGCg -3' miRNA: 3'- gaGAGGCGCUGGCUcau--GCGuGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 81391 | 0.68 | 0.725601 |
Target: 5'- -aCUgCCGaGAUgcaugCGGGUGCGCGCCGCUu -3' miRNA: 3'- gaGA-GGCgCUG-----GCUCAUGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 132274 | 0.68 | 0.715953 |
Target: 5'- cCUCUCCuGCGACCccgccGGUagaagugaucGCGaCACCGCg -3' miRNA: 3'- -GAGAGG-CGCUGGc----UCA----------UGC-GUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 45329 | 0.68 | 0.715953 |
Target: 5'- -----aGCGACCGcAG-ACGCGCCGCg -3' miRNA: 3'- gagaggCGCUGGC-UCaUGCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 49364 | 0.67 | 0.807981 |
Target: 5'- -aCUCgCGCGACCGuGGcACG-ACCGCg -3' miRNA: 3'- gaGAG-GCGCUGGC-UCaUGCgUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 126413 | 0.67 | 0.807981 |
Target: 5'- gUCUCCGCGGCCugcaGGUACuugggGCGCCu-- -3' miRNA: 3'- gAGAGGCGCUGGc---UCAUG-----CGUGGcga -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 29337 | 0.66 | 0.856491 |
Target: 5'- cCUC-CUGCGgcuacgacgucuGCCGGGUACGC-CgGCUu -3' miRNA: 3'- -GAGaGGCGC------------UGGCUCAUGCGuGgCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 133039 | 0.66 | 0.848849 |
Target: 5'- cCUUUCCGCGGC--GGUGCGCGuguuucuggcUCGCa -3' miRNA: 3'- -GAGAGGCGCUGgcUCAUGCGU----------GGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 100217 | 0.66 | 0.848849 |
Target: 5'- -gCUCCGCGGggcgcaguugcUCGGaacGUcCGCGCCGCUa -3' miRNA: 3'- gaGAGGCGCU-----------GGCU---CAuGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 70328 | 0.66 | 0.848849 |
Target: 5'- aCUCgUCCGCGgauccacagaugGCC-AG-GCGCACCGCc -3' miRNA: 3'- -GAG-AGGCGC------------UGGcUCaUGCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 58865 | 0.66 | 0.848849 |
Target: 5'- gUUUCUuCGGCCGuagGGUGCGCAgCGCc -3' miRNA: 3'- gAGAGGcGCUGGC---UCAUGCGUgGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 144409 | 0.66 | 0.841022 |
Target: 5'- uUCgaccCCGCG-CCGAGcgagaggGCGCGCCuGCg -3' miRNA: 3'- gAGa---GGCGCuGGCUCa------UGCGUGG-CGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 122788 | 0.66 | 0.833014 |
Target: 5'- ---cCCGCGACCucgaaaccaGAGUguuaGCGCcACCGCa -3' miRNA: 3'- gagaGGCGCUGG---------CUCA----UGCG-UGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 104312 | 0.66 | 0.833014 |
Target: 5'- uUUUUCGUGACCuuGAGgcGCGaCGCCGCUu -3' miRNA: 3'- gAGAGGCGCUGG--CUCa-UGC-GUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 95504 | 0.66 | 0.828126 |
Target: 5'- cCUCUUCGCGGCggCGAucGUACGUgacguuauggaaggcGCCGCc -3' miRNA: 3'- -GAGAGGCGCUG--GCU--CAUGCG---------------UGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 33276 | 0.66 | 0.824833 |
Target: 5'- --aUCCGCGcccCUGAGgGCgGCGCCGCa -3' miRNA: 3'- gagAGGCGCu--GGCUCaUG-CGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 153947 | 0.66 | 0.824833 |
Target: 5'- gUCUCCaGCGACaCGuuGUACGUACagaGCc -3' miRNA: 3'- gAGAGG-CGCUG-GCu-CAUGCGUGg--CGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 132570 | 0.66 | 0.816486 |
Target: 5'- gUCgUCGCGGCCGcgcuacacuucGGUGCagcgugGCACCGCUu -3' miRNA: 3'- gAGaGGCGCUGGC-----------UCAUG------CGUGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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