Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24363 | 3' | -63.9 | NC_005264.1 | + | 43667 | 0.69 | 0.381403 |
Target: 5'- gGC-GCGCUGcGCGCCgGCGUUAAGGc- -3' miRNA: 3'- gCGcCGCGGC-CGCGG-CGCGAUUCCaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 162693 | 0.69 | 0.381403 |
Target: 5'- gGC-GCGCUGcGCGCCgGCGUUAAGGc- -3' miRNA: 3'- gCGcCGCGGC-CGCGG-CGCGAUUCCaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 127348 | 0.69 | 0.381403 |
Target: 5'- cCGCGGCGUCGcCGUCGUcccCUAGGGUUu -3' miRNA: 3'- -GCGCCGCGGCcGCGGCGc--GAUUCCAA- -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 59698 | 0.69 | 0.381403 |
Target: 5'- aCGCuuuGCGCCGcGCGCCGCGCcGGcGGc- -3' miRNA: 3'- -GCGc--CGCGGC-CGCGGCGCGaUU-CCaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 104532 | 0.69 | 0.389335 |
Target: 5'- uCGCGGgcaGCCGGCGaaGCGCgccaucaGAGGa- -3' miRNA: 3'- -GCGCCg--CGGCCGCggCGCGa------UUCCaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 113256 | 0.69 | 0.397374 |
Target: 5'- -cUGGuCGCCGGCGgCGUGCgccgagAAGGUg -3' miRNA: 3'- gcGCC-GCGGCCGCgGCGCGa-----UUCCAa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 137286 | 0.69 | 0.397374 |
Target: 5'- cCGCGGCGuuGGCGgCGaCGC--GGGc- -3' miRNA: 3'- -GCGCCGCggCCGCgGC-GCGauUCCaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 51094 | 0.69 | 0.40552 |
Target: 5'- uCGCGGuCGCCGGUGCUGCGg------- -3' miRNA: 3'- -GCGCC-GCGGCCGCGGCGCgauuccaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 58368 | 0.69 | 0.40552 |
Target: 5'- gGCGGgGCCGGCGCgauaUGCGCc--GGa- -3' miRNA: 3'- gCGCCgCGGCCGCG----GCGCGauuCCaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 127842 | 0.69 | 0.40552 |
Target: 5'- cCGCGGCgGCCGGCggucuagaacccGgCGCGCgaaUGGGGUc -3' miRNA: 3'- -GCGCCG-CGGCCG------------CgGCGCG---AUUCCAa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 69056 | 0.69 | 0.40552 |
Target: 5'- cCGCGGcCGCCGGgcaggucaucguCGUCGCGCaccgcAAGGUc -3' miRNA: 3'- -GCGCC-GCGGCC------------GCGGCGCGa----UUCCAa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 68171 | 0.69 | 0.408807 |
Target: 5'- uGCGGCGCC--CGCCGCgGCUAcguuugggcuugguuAGGUa -3' miRNA: 3'- gCGCCGCGGccGCGGCG-CGAU---------------UCCAa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 52158 | 0.68 | 0.41294 |
Target: 5'- cCGUGGCGUuucagguagcucuCGGCGCUccugauaaauGUGCUGAGGg- -3' miRNA: 3'- -GCGCCGCG-------------GCCGCGG----------CGCGAUUCCaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 76350 | 0.68 | 0.41377 |
Target: 5'- gCGCGGCGaCUGcGCGCagGCGCguuGGUa -3' miRNA: 3'- -GCGCCGC-GGC-CGCGg-CGCGauuCCAa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 3460 | 0.68 | 0.41377 |
Target: 5'- cCGUGGCGcCCGGUGCCGCauccacgaugugGCacgcgucgugGAGGUUu -3' miRNA: 3'- -GCGCCGC-GGCCGCGGCG------------CGa---------UUCCAA- -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 131717 | 0.68 | 0.421282 |
Target: 5'- gCGCGGCguuGCUGGCGCUcuggcgcuacaauGCGCUAcGGc- -3' miRNA: 3'- -GCGCCG---CGGCCGCGG-------------CGCGAUuCCaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 118058 | 0.68 | 0.421282 |
Target: 5'- cCGCGGCGUCGGCaacgaucGCCGCGggcacCUuuGGg- -3' miRNA: 3'- -GCGCCGCGGCCG-------CGGCGC-----GAuuCCaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 42068 | 0.68 | 0.422122 |
Target: 5'- cCGCGGCGCgUGGCgucaGCUGCGCc-GGGa- -3' miRNA: 3'- -GCGCCGCG-GCCG----CGGCGCGauUCCaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 25540 | 0.68 | 0.430575 |
Target: 5'- gGCGGCGCggacaaGGCGCuuguCGCGCUcguccAGGGg- -3' miRNA: 3'- gCGCCGCGg-----CCGCG----GCGCGA-----UUCCaa -5' |
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24363 | 3' | -63.9 | NC_005264.1 | + | 69671 | 0.68 | 0.430575 |
Target: 5'- aCGCGGCGCUGGgGCCuugguucuccGCGgUugcguccugGAGGUUc -3' miRNA: 3'- -GCGCCGCGGCCgCGG----------CGCgA---------UUCCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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